HsaEX0016164 @ hg19
Exon Skipping
Gene
ENSG00000082438 | COBLL1
Description
COBL-like 1 [Source:HGNC Symbol;Acc:23571]
Coordinates
chr2:165578935-165584707:-
Coord C1 exon
chr2:165584479-165584707
Coord A exon
chr2:165583616-165583654
Coord C2 exon
chr2:165578935-165579032
Length
39 bp
Sequences
Splice sites
3' ss Seq
TTATACCCCTCCTTCTGTAGCCA
3' ss Score
7.86
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
AAAACTGTGAGAGTAGTGATTAATTTTAAGAAAACACAGAAGACCATAGTGAGAGTGAGTCCACATGCATCGCTTCAAGAGCTTGCCCCTATTATATGTAGCAAATGTGAGTTTGATCCGTTGCATACACTATTGTTGAAAGATTATCAATCGCAGGAGCCTCTTGACTTGACAAAATCTCTTAATGACCTGGGACTAAGAGAATTATATGCGATGGATGTCAACAGAG
Seq A exon
CCACTTCTGTTACTGTCTTCAGTAAGTCATCTTTACAAG
Seq C2 exon
AGTCCTGCCAAATATCACAAAACCTAGATATTATGAAGGAGAAAGAAAATAAAGGGTTTTTCAGTTTTTTTCAACGCAGTAAGAAAAAGCGAGACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000082438_MULTIEX2-8/10=7-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.002 A=0.000 C2=0.153
Domain overlap (PFAM):
C1:
PF094695=Cobl=PU(51.1=61.0)
A:
PF094695=Cobl=FE(14.1=100)
C2:
PF094695=Cobl=PD(33.7=93.9)
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCGATGGATGTCAACAGAG
R:
GGTCTCGCTTTTTCTTACTGCG
Band lengths:
117-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)