HsaEX0016162 @ hg19
Exon Skipping
Gene
ENSG00000082438 | COBLL1
Description
COBL-like 1 [Source:HGNC Symbol;Acc:23571]
Coordinates
chr2:165561462-165600385:-
Coord C1 exon
chr2:165600197-165600385
Coord A exon
chr2:165586424-165586625
Coord C2 exon
chr2:165561462-165561615
Length
202 bp
Sequences
Splice sites
3' ss Seq
GAAATACTCTTGTTTTACAGTAA
3' ss Score
6.01
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GAGAAAACCAAAAGCCAAGGCACCACTTCCTCCAGCTGAGACCAAATATACTGATGTCTCTTCAGCTGCTGATTCTGTAGAATCCACTGCTTTCATCATGGAACAGAAAGAAAACATGATAGATAAAGACGTTGAACTCTCAGTGGTCCTACCTGGGGATATTATCAAATCTACTACTGTTCATGGCAG
Seq A exon
TAAACCTATGATGGACTTGTTGATATTCCTTTGTGCACAGTATCACTTAAATCCATCAAGTTACACAATCGATCTGTTGTCAGCTGAACAGAACCACATTAAATTTAAGCCAAACACACCAATAGGAATGTTGGAGGTAGAGAAGGTAATTTTAAAGCCAAAAATGTTGGATAAGAAAAAACCTACACCTATAATACCAGAG
Seq C2 exon
AGTCCCTGTGAAGCAGGAAGAGTGAGGGCAGGTTCACTGCAGCTCAGCAGCATGTCTGCAGGGAATTCATCTTTGAGAAGGACAAAGCGAAAAGCACCTTCCCCACCCTCCAAAATACCCCCGCATCAAAGTGATGAAAATAGTCGTGTGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000082438_MULTIEX2-6/10=5-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.370 A=0.005 C2=1.000
Domain overlap (PFAM):
C1:
PF0219610=RBD=PU(23.6=26.6)
A:
PF0219610=RBD=PD(75.0=79.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCCTCCAGCTGAGACCAA
R:
GATGCGGGGGTATTTTGGAGG
Band lengths:
292-494
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)