GgaEX6042546 @ galGal3
Exon Skipping
Gene
ENSGALG00000011068 | COBLL1
Description
NA
Coordinates
chr7:21564517-21571276:+
Coord C1 exon
chr7:21564517-21564701
Coord A exon
chr7:21569834-21570035
Coord C2 exon
chr7:21571048-21571276
Length
202 bp
Sequences
Splice sites
3' ss Seq
GTTTGATTTGTATTTTACAGGAA
3' ss Score
9.58
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
TTCAGAAGAAAAGCTAAAGCACCTCCTCCTCCATCTGAAACCAAAACAGTCACTGATTGTCCATTTGATGACACAGAATCAGCCACCATCATCATGGAACAGAAGGAGAATGTAATTGATAAAGACATTGAACTGTCAGTGGTCCTGCCAGGAGATGTGATCAAATACACTACAGTTAATGGGAG
Seq A exon
GAAGCCCATGATGGACTTGCTGATCTTTCTCTGTGCACAGTATCATTTAAACCCCTCAAGCTACACTATAGAGTTGATATCAGCAGAAAACTGCCAGATTAAATTCAAACCTAATACACCAGTGGGAATGCTTGAAGTGGAAAAGGTGATTGTAAAACCAAAACAAATGGATAAGAAGAAACCTGTTCCAGTGATTCCAGAG
Seq C2 exon
CAAACAGTAAGGGTAGTGATAAACTACAAGAAGACACAGAAGACAGTAGTAAGAGTTAGTCCATATTCACCGCTTCAGGAACTCATACCAATTATCTGTAGTAAATGTGAATTTGATCCTTCACACACTGTGTTACTGAAGAATTACCAGTCTCAAGAAGCCCTTGATGTGACAAAATCTCTTAATGATCTTGGACTAAGAGAATTATATGCCATGGATATCAGTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011068-'0-4,'0-2,1-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.288 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF094695=Cobl=PU(59.5=61.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACACAGAATCAGCCACCAT
R:
TTGTCACATCAAGGGCTTCTT
Band lengths:
292-494
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]