DreEX0002929 @ danRer10
Exon Skipping
Gene
ENSDARG00000102829 | COBLL1 (2 of 2)
Description
cordon-bleu WH2 repeat protein-like 1 [Source:HGNC Symbol;Acc:HGNC:23571]
Coordinates
chr9:50454403-50469222:+
Coord C1 exon
chr9:50454403-50454591
Coord A exon
chr9:50462411-50462618
Coord C2 exon
chr9:50468997-50469222
Length
208 bp
Sequences
Splice sites
3' ss Seq
GGTCTGCTGTGTGTTTTCAGCAA
3' ss Score
7.9
5' ss Seq
GAGGTATTC
5' ss Score
6.35
Exon sequences
Seq C1 exon
GAGATCAACAAAAAGCAAAGCCCCTCCTCCTCCGGTCCTGACAGGTCTGGATGCTCCTCTGCTGAGCCACAAGCTCCAGGCCTTCCCTCATCCAGCCATGGAGCAGACGGAGAGTCTGCTGGAGCAGGAGCTGACGCTCACCGTCATCCTGCCTGGAGGAGCAGAGAAGATCACCACAGTCCACGGCAG
Seq A exon
CAAGCCCATGATGGACCTGCTGGTGATGCTTTGTGCCCAGCACCACTTGAACCCGTCGGGCCACACCCTCGAGTTGATCACCACCAACAGAAACCATGTAAAGTTCAAACCCAACGCCCTCATCGGAGCCCTGGAGGCTGACAAGATCCTGCTGAAACCCAAAGGCATGGAGGACAAAAGCAAAAAGACAGGACCGCATATGCCTGAG
Seq C2 exon
GCCACTGTGCGATTAGTGATCAACTACAGAAAAACCCAGAAAACCATCCTGCGAGTGAGTCCTCGAGTTCCTCTGCGCGAGCTGCTCCCGGCGATCTGCCAGAAGTGTGAGTTTGACCCGCAGACCACACTTTTATCACCAAGCGTCCAATCAGAAGACACACTGGACCTGAGCGGATCCCTCAATGACTTCGGCCTGAGGGAAGTGTACGCAAGAGACACTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102829_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.398 A=0.307 C2=0.118
Domain overlap (PFAM):
C1:
PF0219610=RBD=PU(26.8=29.7)
A:
PF0219610=RBD=PD(71.8=72.9)
C2:
PF094695=Cobl=PU(45.9=59.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAAGCAAAGCCCCTCCTCC
R:
TGCGGGTCAAACTCACACTTC
Band lengths:
302-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]