BtaEX6009437 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr2:31631293-31647850:+
Coord C1 exon
chr2:31631293-31631481
Coord A exon
chr2:31643993-31644194
Coord C2 exon
chr2:31647622-31647850
Length
202 bp
Sequences
Splice sites
3' ss Seq
GCACTACTCTTGTTTTACAGTAA
3' ss Score
7.03
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GAGAAAACCAAAAGCCAAGGCACCGCTTCCTCCAGCTGAGACCAAATGCCTTGATGCCTCTTCAGTTGATGATTCTGTAGAGTCTTCTGCTTTTATCATGGATCAGAAAGAGAACATGACAGATAAAGACATTGAACTCTTGGTGGTTCTACCTGGAGATATTATCAAATCTACTACTGTTAATGGCAG
Seq A exon
TAAACCTATGATGGACTTGTTGATTTTCCTCTGTGCACAATATCACTTAAATCCATCAAGTCACACAATTGATCTGCTCTCAGCTGAAAAGAACCCCATTAAATTTAAGCCAAACACACCAATAGGAATGTTGGAGGTGGAAAAAGTAATTTTAAAGCCAAAAATTCTGGATAAGAAGAAACCTACACCTTTAATACCAGAG
Seq C2 exon
AAAACTGTGAGAGTAGTGATCAATTTTAAGAAAACGCAGAAGACAATAGTAAGAGTTAGCCCACATGCACCTCTTCAAGAACTTATCGCCATTATATGCAGCAAATGTGAGTTTGATCCATTACACACACAGTTATTGAAGGACTATCAGTCTCAGGAGCCCCTTGACTTGACAAAATCTCTTAATGAACTGGGACTGAGGGAATTATATGCCATCGATGTCAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005501-'7-3,'7-2,9-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.219 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0219610=RBD=PU(24.7=28.1)
A:
PF0219610=RBD=PD(74.0=79.4)
C2:
PF094695=Cobl=PU(59.5=61.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTGATGCCTCTTCAGTTGA
R:
CAAGGGGCTCCTGAGACTGAT
Band lengths:
308-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]