MmuEX0012050 @ mm9
Exon Skipping
Gene
ENSMUSG00000034903 | Cobll1
Description
Cobl-like 1 [Source:MGI Symbol;Acc:MGI:2442894]
Coordinates
chr2:64971636-64989224:-
Coord C1 exon
chr2:64989036-64989224
Coord A exon
chr2:64974402-64974603
Coord C2 exon
chr2:64971636-64971864
Length
202 bp
Sequences
Splice sites
3' ss Seq
TCATTGTTCGTGTCTTTCAGTAA
3' ss Score
9.03
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
CAGGAAAACAAAAGGGAAGGCGCCTCTTCCTCCGGCCGAGACGAAGGGCACTGATGTCTCTTCTGCTGAAGACCCTGTAGAATCTACTGCTGTCGTCACAGAGCAACAAGACAATATGATAGATAAAGATATTGAGCTCTCAGTGGTCCTGCCGGGAGATATCCTCAAGTCTACTACTGTTCATGGCAG
Seq A exon
TAAGCCAATGATGGACTTGCTCGTGTTCCTCTGTGCTCAGTATCACTTAAATCCGTCAAGTCACACAATTGATTTGCTCTCTGCTGAAGAGAACCTTATCAAATTTAAGCCAAACACACCAATAGGAATGCTGGATGTAGAGAAGGTAATTTTAAAGCCAAAATCTCTGGATAAGAAAAAGCCTACACCTATAATCCCAGAG
Seq C2 exon
AAAACTGTGAGAGTAGTGATCAACTTTAAGAAAACACAGAAGACCATAGTGAGAGTTAGTCCCCACGCACCCCTTCAAGATCTTGCTCCCATCATATGCAGTAAATGTGAGTTTGATCCGTTGCATACCGTGCTGTTGAAGGATTACCAGGCTCAGGAGCCCCTCGACTTGACAAAATCTCTTAATGACTTGGGACTAAGAGAGTTATATGCCATGGATATCAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034903_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.579 A=0.016 C2=0.000
Domain overlap (PFAM):
C1:
PF0219610=RBD=PU(24.7=28.1)
A:
PF0219610=RBD=PD(74.0=79.4)
C2:
PF094695=Cobl=PU(59.5=61.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCACTGATGTCTCTTCTGC
R:
GCCTGGTAATCCTTCAACAGCA
Band lengths:
296-498
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: