GgaEX6042546 @ galGal4
Exon Skipping
Gene
ENSGALG00000011068 | COBLL1
Description
cordon-bleu WH2 repeat protein-like 1 [Source:HGNC Symbol;Acc:HGNC:23571]
Coordinates
chr7:19585831-19592585:+
Coord C1 exon
chr7:19585831-19586010
Coord A exon
chr7:19591143-19591344
Coord C2 exon
chr7:19592357-19592585
Length
202 bp
Sequences
Splice sites
3' ss Seq
GTTTGATTTGTATTTTACAGGAA
3' ss Score
9.58
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
AAGAAAAGCTAAAGCACCTCCTCCTCCATCTGAAACCAAAACAGTCACTGATTGTCCATTTGATGACACAGAATCAGCCACCATCATCATGGAACAGAAGGAGAATGTAATTGATAAAGACATTGAACTGTCAGTGGTCCTGCCAGGAGATGTGATCAAATACACTACAGTTAATGGGAG
Seq A exon
GAAGCCCATGATGGACTTGCTGATCTTTCTCTGTGCACAGTATCATTTAAACCCCTCAAGCTACACTATAGAGTTGATATCAGCAGAAAACTGCCAGATTAAATTCAAACCTAATACACCAGTGGGAATGCTTGAAGTGGAAAAGGTGATTGTAAAACCAAAACAAATGGATAAGAAGAAACCTGTTCCAGTGATTCCAGAG
Seq C2 exon
CAAACAGTAAGGGTAGTGATAAACTACAAGAAGACACAGAAGACAGTAGTAAGAGTTAGTCCATATTCACCGCTTCAGGAACTCATACCAATTATCTGTAGTAAATGTGAATTTGATCCTTCACACACTGTGTTACTGAAGAATTACCAGTCTCAAGAAGCCCTTGATGTGACAAAATCTCTTAATGATCTTGGACTAAGAGAATTATATGCCATGGATATCAGTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011068-'14-10,'14-8,15-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.328 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF094695=Cobl=PU(51.1=61.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACACAGAATCAGCCACCAT
R:
TTGTCACATCAAGGGCTTCTT
Band lengths:
292-494
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]