DreEX6038660 @ danRer10
Exon Skipping
Gene
ENSDARG00000102829 | COBLL1 (2 of 2)
Description
cordon-bleu WH2 repeat protein-like 1 [Source:HGNC Symbol;Acc:HGNC:23571]
Coordinates
chr9:50468997-50473243:+
Coord C1 exon
chr9:50468997-50469222
Coord A exon
chr9:50469851-50469910
Coord C2 exon
chr9:50473146-50473243
Length
60 bp
Sequences
Splice sites
3' ss Seq
GTTTGTGTTTTCTCTTGCAGTTA
3' ss Score
11.61
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GCCACTGTGCGATTAGTGATCAACTACAGAAAAACCCAGAAAACCATCCTGCGAGTGAGTCCTCGAGTTCCTCTGCGCGAGCTGCTCCCGGCGATCTGCCAGAAGTGTGAGTTTGACCCGCAGACCACACTTTTATCACCAAGCGTCCAATCAGAAGACACACTGGACCTGAGCGGATCCCTCAATGACTTCGGCCTGAGGGAAGTGTACGCAAGAGACACTAGAG
Seq A exon
TTATTAGTCCTGTAAGTCCTATCAGTCCAGTCAGTCTTCCTCCATCTCCAACTCGCTCAG
Seq C2 exon
AAATATTTTATCACGGGAAAGAAAAATCCTTGCGGGAGAAGGATAACAAAAGGCGCTTCAGTCTGTTTCGCAGAGGAAGCAAGAAGCAATCCGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102829-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.118 A=0.732 C2=0.879
Domain overlap (PFAM):
C1:
PF094695=Cobl=PU(45.9=59.2)
A:
PF094695=Cobl=FE(19.4=100)
C2:
PF094695=Cobl=PD(31.6=93.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCGGATCCCTCAATGACT
R:
GCTTCTTGCTTCCTCTGCGAA
Band lengths:
144-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]