RnoEX0022654 @ rn6
Exon Skipping
Gene
ENSRNOG00000027016 | Cobll1
Description
cordon-bleu WH2 repeat protein-like 1 [Source:RGD Symbol;Acc:1308954]
Coordinates
chr3:51187821-51196040:-
Coord C1 exon
chr3:51195812-51196040
Coord A exon
chr3:51194599-51194637
Coord C2 exon
chr3:51187821-51187918
Length
39 bp
Sequences
Splice sites
3' ss Seq
TTTACTCCCTCTTGCTGTAGCCC
3' ss Score
9.02
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
AAAACTGTGAGAGTAGTGATCAATTTTAAGAAGACACAGAAGACCATAGTGAGAGTTAGTCCCCACTCACCGCTTCAAGACCTTGCTCCCATTATATGCAGTAAATGTGAGTTTGATCCATTGCATACAGTGTTGTTGAAGGATTACCAGGCTCAGGAGCCCCTCGACCTCACAAAGTCTCTTAATGACCTGGGACTAAGAGAGTTATATGCCATGGATATCAGCAGAG
Seq A exon
CCCCCTCTGTTACTGCCTTCAGTAAGTCATCTTTCCAAG
Seq C2 exon
AGTCCTGCCAAATATCACATAACCCGGACATTGTGAAGGAGAAAGAAAACAAAGGGATTTTCAGCTTTTTCCAACGCAGTAAGAAAAAGCGAGAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027016_MULTIEX1-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.333
Domain overlap (PFAM):
C1:
PF094695=Cobl=PU(51.1=61.0)
A:
PF094695=Cobl=FE(14.1=100)
C2:
PF094695=Cobl=PD(33.7=93.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTCGACCTCACAAAGTCT
R:
TCTCCTTCACAATGTCCGGGT
Band lengths:
112-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]