RnoINT0038644 @ rn6
Intron Retention
Gene
ENSRNOG00000027016 | Cobll1
Description
cordon-bleu WH2 repeat protein-like 1 [Source:RGD Symbol;Acc:1308954]
Coordinates
chr3:51187821-51194637:-
Coord C1 exon
chr3:51194599-51194637
Coord A exon
chr3:51187919-51194598
Coord C2 exon
chr3:51187821-51187918
Length
6680 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
GTTTCTTCGTGTTTTTTCAGAGT
3' ss Score
10.04
Exon sequences
Seq C1 exon
CCCCCTCTGTTACTGCCTTCAGTAAGTCATCTTTCCAAG
Seq A exon
GTAAGATCCAAGAATTAAAAAAAAAAAAACCTGTAAATTATAACAAGAAATTGGGAAGATTAAAATTGAGATTCTAATCTTACTTTTTAACATTACTAACACATGCATTCTGTAAGAGATTTTAACTTAGAAAAATCTTGGGGCTTTATTTCCTTAAAAAAAATTTAAAGGTTTTACCTTCTTTGATTTCTGGCGTGAATTATACTAATTTCATTTCAATAGAACACTGATAAATGATATCATTCTAGACCTGGGAGTAGATCCACAATTCTAGCACTCGGGGAGGCAGGGCAAGAGGATTCCACATTCAAGGCCAACCTGAGCTCCATAGGAGAAAAATAATCCCAAATGCTAAAAACAATACAGAAAATAATAACCAGGCTAAAGTGTGGGAAACAGGGTTTGTTACTTCATATAAAAGGAAATGATCTTGGTAGGAATACTTTGGCAATGCTGTGGACGGGATTGAACTTATTCTCAGTGAGCAGCTACTGGGAAAGGTAGCACTCTCAGTTTTATCACAACATTTTTTCCCCACCATTTAGATTTTGTCTGAATTTTGTAATGACATAAAAATTTTATGTTACAATTATTAGGTTTAAAAGCTTATAAGGGCATTTGATACTGTATGTAAAAATATCTTTTACATGAAACCTCTGAAAGGAAATCTATAAAATGTTTAATAGTGATTAGCTCTGAGTGGTTGGGCTGGGAGCAAGTTTTCATATTTTTCTTTTTTCTTTTTTTTTTTTTTTTGGAGCAGGGGACCTCGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCTCATATTTCTTTAAGTATAATTATTTCTGTAGATGCATAGTTTGTAACAAATATATATTATTTTCATAGGAAATTTGGTTAAAAGTATTCAATAATAGAATCTAGGACTCTTTTTCTCCTCCATTACTAATCTGTGTAAAGGTAGCTTTTATTCACCTGATATAATCGTCATCTCTGAGGCTTAGTGCTGCGTAAGCTCACTGTGTCTAGATCTTTGTCCTCTTACTGGCTGGTTTGACTCAGCTGTTCTGCTCAAACTCCTCTCCAAGCTGACTGATTCAATCTGGCTTTTCTCAGCTTCTTGCTAAATTGCTCTGCTTGGCCTCAAACTAACTCTGGCAGTCTGTTCTAATCTTCTAGCTCCTTCTCATTCTCTGGCTTTTGAACTATCTTTGCTGACCTGTAATAAAGTGCACGAACTCACAATGAACTCAACGCCACTGCACTCCCTCCTGTGCTGACTGGCTGAACTGAACCTGTCTGTCCGTCTGTCTCTATCTCTTTGTCTCTGTCTCTCTGTTTCTTACTCTTTCTCTTCCCTCCTCCCTTCCTTCCCTCCCTCCCTTTTTCTCTGTCTCTCCCTCTCTCTCTCCCTGTTCTGCTCTTAAATAGCTTCTCTTGTCAGTTCTCATAAGAGTTGGGTGTATCTTATCTCTGACTCATTCTGTCAAATGTTTCTCTGATTCATCACTTTGTCTGCCCCTCAGTTAGACTTTACTTGTAACAATAGCTGTTTTCTTCTAAAACCTAACCTTACATACATTGTTTGGGATTAAAGGTGTGTACTAACAACCATGTTGCTGGATTAAAACTCCTCTACAGATTTGTCTATTCATTACTGCCCTATTAAAGTACATGTTACATGTTGCCAGGTTCTTCTGATTGAGCTTGCAGGAGCAAGTATATGTTGATTTAGTGGCTATCACAGGCTAGCCTAATCAAAGGAGTTAAAAATTCCTGTCATCTTAAAATATACCCTGGTAGAGAATCAGAAACCAGGTTCTTTAAATCTGAGGGTACCTTGACTGTTAAGCCGAGGTTGCAAGCTTTTAGAGAAAATAGCTTTATGATTCTCCTTCTGTAATGAGTCAAGCAATGAGAACAAATGGTCTTTGCTTCACTCCAGAAACATGCTTGTACTTTGCTTGGTCCCAAGCACATTCCATGATCTTCTTAGGCTCCACTTTAAGGTGTTTAACCCATTGATGTCTAACGTCTTCTCTGGCCTTACCTGAAGCTGGTTTTTCCAGAGACTTAAATGCTATAAGCAGAACCTTCGGAGATAAGAGTTGTGGGATCAAGAGAGCTCATTTTACAGTGTCAGAGTCCAGCAGGGCTGTCCAAACCATACTTGCTTTTATCCCTGGCTATGGCCAGATGTCATCAGAAGCCAGTAGACTTTGTGTTGCCGTGACTTTCTCATCTAGAATCAGGAAGCTACAGTGCTTGAGCTGATTCTCTCAATGAAGGCAGGTTTGTACTCATCTTAGTGTTTAACTCTGACACTTAGCGATCTACACACAAGATTTTAATTGAAGAGGACTGACACAGACATAGTGTGGAGGGGGGAAAGCATCTTTCGACATATTCTGGTGACATTTACTGAAGGAATCTATGAGTTTGCACATTATTCAAATCTCAGGTCACTTGATTACTTAAATGTGAATGGAATGCTGATTTTTTTTTTTTTTTTTACACATTTGTAACTAATATGTGCCAGTTGGGAAAAATAGCTCAGGATGAAGCTTTTATTTCTTCTTTCACATAGTTGTTCTCAAAAATAAAGTGAATGAAAAACTTTTAGCCTTGAAGCTCTATGTCCTCAGTGTTCCAGGTCGGCCTTAGGAAGGCCCGTGTGCAATGGGTACTTCCTGTTTAATGTTTGAGTTATCGAAGTGTTATTATGTGAAATACAGTTTTCCTTTACAATGTTAACTGTGACGGGTTGCACTAATAAGAGTTTTGATGTTAACTATCTGCCCTGTTTTTCTTTTTTTTTGGCTGTGTTAAAACACCGTGACCAAAAGCAACTTGAGAAGGGGAAGTTTTATTTGCCTAGCATATCCCGATCACAGTCTATCATTAAGGGAGGCTTATTAAGGAATTGTAGCAGAGGAGGGACTTAGAAACAAATGGAAGGAGGGGCCATTGCTTCCTCAGCCTACTTTCTCACACAACCTGAGATCACCTACCCTGGGGTTGCCCCAGCCACAGGAGACTGGACCCTCCCCCACGGGAGGCTGAGCCCACATCAATTATTATTTTAAAAAGAATGTCCCACAGATCTACCTACAGGCAATCTGATGGAGAGAGGCCTTTTCTAAAAGAGGTTACCTCTTTTGAGAAGATTGTAGCTTGTGCCAAATTGATTAAAAAACAACCAAACCAAAACCACCACCACAACAAAACAACCCAAAGAAAACCAAAACCCAGCAAGTACACTCTTTTGTGTCCCTACAGTGGTCTCTACATTGACATATGTTGTTTATAAACACATTTTAAAAGCACTTAAGATTGTACATTTATTTCTAAGTCCCATGTAGGTTTTCTTTCAATTAAAAAAAAAAAACATTTACTAGTTCTTTGTGAATGTTACATCAAGCACACCAATCTCAGTCATCTCCCTTTTCCCTTGTACCCTCCCTCCAGCTGGGCAACATCACCACCAACAGAGAAAAGAAATCACTGTGGAAGCTCTAGAGCGTCAGAGTGTGTCCTATATTATATCCGCTTGTCCACACTTCTTTTCTTGGAAATGTTTAATAAAATGACTTGTTGGCCTGGTACGAGGCCTCTGACTTCTGCTACACTATCAAAGCTGGATCCTCACTGGACTCCTCTCAGATATCCTGTTGTTGCCCTGTCATGGAGATCCTATAGTTTTAGAGCTGTAGGGTCTGCCCGTTCATGCCCTCTAGCAGTCCATCTGTGGCGTAGATGTTGGGGTGGGCCAACGCAAAGCCCTGGCTCTGGGCCTGAGATGTGAGCTCATCATCCTGCGAGCTCTCGTGCTCCCATGCCCTTACTAGCAGGTCCTTCTACCAGGGCCAGCTCTACCGTGCTGCCTAGGTTATGTTCAGAGCCCGTTCTCCTGAGTGTTGCCACCAGTGAGGGACATGGCCAGTTCTGCCACTCTTATGACACTGGGCCAGCTTTCCTGCCTGCCATAGAGATGAGGAAGGGGAGGAAGGCGTCTCTTCCTCGTCTGCACTACCACCCAGCAGACAAGAAGCAAGGTGGACTCTTCCGCCCTTCCTTACTCATGCTATTGGGGCTGGCTCATCTGCAACCCCCACATCAGTGCCAGCTCTACCATGCTGCCCAGGCTTTTACCTAGCCAGTCTTCTGGGTGCTACAGTAGGTGGGGAGTCAGCTCTGTCTCTCATGACCTGGGGCCAGCTCTCCTGCCTACCATTGGTAACAAGGGTTGGGGAGCATTTCTCCCTCACCCACGTCACTACAAGGCAGACAACAGGACAGTTGAGAGGGCTAGCTCTCCCACACTTATGGCCTTTAGGCAGGTTCACCTATGCCCCTACCACCAAGGTCAGCTCTCTTGTGCTGCCCAGGTTCTCTCTATTTTTTACGTGAAGTGCTTTGTTTCTACTATCATTGAAATTGCACAATGATTTGCATAAAAATTCTCATGTTTCTTTGTGGAAAAAATATTTTCACAGTTTAGTCCTTGTCTCTCCTTCTTTGAATTTATAATTTTTTTTTAACTGAAGACACAAGGTTCTTTGTCTCACGGGCCATCCAATAGTTTTTTTTCTTTCGCTCTTGGTCCCATGAACCCTGTGGGTATAACTTCACCTACTTATCTATTCTTTATTCAACTGACTATAAATCTAGAGACTTGACAGGTTTGGGTGAGATAATTTGTGGCAAGAATACTTCATAGGAGCTCGATAATGTTTGTCTGTAGTCCGAGCTCCTCAGGAGGTGAAGGAGGAGGGATTGCATAAGCCCGGAGCTGTAAGGCCACCCTGAGCTCCACAGAGAGATCCCCACTCCGGGAAAACAAAACACCTTTCTTAAGTAGCATGGCTTGCACTTCCACTTACAGATACTTTAATAACATCGGTAATCAGCAGCGTCTGCCGTGAGCATCTTAACAAGGAGCTAAAAAGAATGTCAGTCTTAGGCAATCCTCCTTTCAGCCACCAGGTGCTTGTTTTAAATCTCGTGTGTATAAATGTGTGGGTCATGGTAGGATTCCTGGACGGGGTTGTGTGTGCTCTGACATGCATGGAGCAGACAGGATATTGGTCCTTGCTTTCTACCACGTTTGAGACAGGGTCTCTTTCTTAATGTGCCTGCCAGCTAGAGGGCCCACAGGCCGACATCGGTTCTCCTGTCTGCTTCCCAACACATCATAAGAACACTAGAGTTACAGATGTGTGTTCTCACATCTAGCTGTATGTGGGTTCAGGGAATCTGAACTCAGTTCCTCCAGCTCACCTGATACCTTTCAATAGAGTTACTCTTATGCCATCACAACGGTGATGATTTTTGTATATAGAAACCACCATAGGATGGTCCCTCAGCCCTTCAGTATGACTCCCAGTAGCTTGCACACTGACTTGTTTGTAGCTCATTGCTTTATACAAACAAGAAATAAACGAATGCACAGTTCTCATGTTCCTTTTAGTGGGAGACCGGGTTGGAAGTGTGCTTGGGACACAGCGGCTTAGATGCTGGCTTTGACCTTGGTTATTGATCCCTTTGTTGATATTAGGAAACAGGTTTTTTTTTTTTTTTTTTTTTTTTTCGGAGCTGAGGACCGAACCCAGGGCCTTGCGCTTGCTAGGCAAGTGCTCTACCACTGAGCTAAATCCCCAAACCCCTTTTGTTTATTTTGTGTTGTAGTTGTAGCTGTTGTTTTTATTTTAAAGAAAGATTAGAAACAGAGCCTTGAAGTTTGGCAGTCGCCATTCTAACTAAAGTCTAATTGTAGCACTGTTAATATATAGAGCGCTTGGTAATTATGAAACCACTAGAATTTCTAAGAGAAGGCATTTAAGAGACAATACTTGGTGAGACAGTCTTCCCTCAGTGCCTGGGGAAGATTGATTGTGAACACTTGAGGGTTCCAAAAGCTGTGGAAACTCAAGTCCCTGAAAAAGAATTGCCTAGTGTATGTATGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATAGGTGTGTGTGTATATATATACATATCTTATGCCCATGTCCAACACCCATATACATTAAGCCATCTTAGGAGTATTTGTGATACCCAATACCTCTTTGTAAAGTGCTTTATAATGGTCATTATTGTGAGTTTCCATCAGAAATGATGGCAAGGAAAGAAATCCGTATGCATTCAGTACAGATCAGATTTTTCCTGAGGCATTTTCCATGCGGAATTTGTTTAGATCCATGGGGGCAGAGAGAGTCGCAGCTGTAATTATAACGGCTCGTGGTTTTCGAGAGTGAAATACTTCATGGTTGTTTAGGTCTGACAAAATTATAGCTGAAATAAACAAAGGGACAAGCGTCATGTGGTCATGTGTCACTGCGACGCAGACTTCTCGCTTTGCATTTGAAATGCTGGTAATTACACAGTACCTAAGAAGTTGAGTTCCCTGTCTAGCCGTGCCTCCTGGCCCTGGCTGTGTGTCTTAGCTTCCTTAAGCTTCACTTCGTTCTCATCTAAAATGGTAACCGTGTCTGTTTGCTGCTTTGAGGAACGTATATGGTGCCTTGCACAGTGGCTGTAATGGGTGGTGGTCATCACCAGAAAATCTTCTGAAAGGGAGGTTAGAAAAGAAACATTAGAAATGAGCGTCCCATCCGAGAACAAAAAGTAAATTGTTTCTTCGTGTTTTTTCAG
Seq C2 exon
AGTCCTGCCAAATATCACATAACCCGGACATTGTGAAGGAGAAAGAAAACAAAGGGATTTTCAGCTTTTTCCAACGCAGTAAGAAAAAGCGAGAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027016:ENSRNOT00000001607:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.333
Domain overlap (PFAM):
C1:
PF094695=Cobl=FE(14.1=100)
A:
NA
C2:
PF094695=Cobl=PD(33.7=93.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]