GgaINT0046139 @ galGal3
Intron Retention
Gene
ENSGALG00000011068 | COBLL1
Description
NA
Coordinates
chr7:21571048-21573642:+
Coord C1 exon
chr7:21571048-21571276
Coord A exon
chr7:21571277-21573544
Coord C2 exon
chr7:21573545-21573642
Length
2268 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
ACTCTTGTCTCCCCTTTTAGATT
3' ss Score
12.06
Exon sequences
Seq C1 exon
CAAACAGTAAGGGTAGTGATAAACTACAAGAAGACACAGAAGACAGTAGTAAGAGTTAGTCCATATTCACCGCTTCAGGAACTCATACCAATTATCTGTAGTAAATGTGAATTTGATCCTTCACACACTGTGTTACTGAAGAATTACCAGTCTCAAGAAGCCCTTGATGTGACAAAATCTCTTAATGATCTTGGACTAAGAGAATTATATGCCATGGATATCAGTCGAG
Seq A exon
GTAAGAAAACTTAAGATATCTTTGATAACTTGTTATTGAAAAGATAATTACATAATATTTCCATAATATATACTTCTTGCTTTGGTGCAAGTGGGTTTGGTTTTGTTTGTTTTGTTAAAAAAAAAAAAAAAGCAACTCATGAAGAAATTAATTTCACACAATTTAGTATATGCTTAATTGATCTCCCACAAAATTGAAACTGTGGGACAAGCATACCTTTACTTATCCCAAGGAAATAGGATGGGTGGTCAAGTACAAAGCATCCTCTAAAAAAGAAATCCCTTTCTCTCCCCTGCCTTTTCTGAGAAAATACCAATAATGCTGTATTTCCCTTAGCTTATAGAGAAGGTGTAGGATTGTGATGAGCTGAGAACAGAAATATCATAGAAACGTAGCTTTGTTCTATAATTTTGAAATATTAGAATACTGTGATAATGCTTTTCAGTGCAATTTGAGTATTGTTTGGTAATTTCACATAAAGATAATGAAGGAACAATAATTGTGTTTTTAATCATGGTCCAACAGGGACTGTATTAACTAATTTGCTGATATTTGTGTCCACATTCTATTTCTGGTTGTCAGTACAGCTGTAAGACTGTCTTTATTGTGCCACGATGAAAAATTACTTCCCAAAGGCCAGTTATCTTGAACTGCAGGAGAATGTCAGATTTGGAAATTACGCTCCCTTTCCATGGAGAAAACCATAACAAAATATTTTTTTTTGTCACAGGAAAAAAACAACAACAACAACAACAACAACAAAAAACCTGTTGCCTAAATGTGCACATAGTTCAAACAACACCCATAGTGAATTATCTTTTCTGTCATCTGACTACCACTTTCTTCTACAGACTGGCAGAGCTGCCTTTGATGCAGCATGAACTGCATACTGCATTCGTTTGAATGAAGTAACAGCCAAAAATCCTGAGAGGATGCAAGGGAATACACACTTCCCACAAGGCAGTGCCCCACTAGGAAGTTCAGATATACTACAACTCATTCCATACCAAGTAGTTTAGCATTTCCATTTTGCGTACAACTTAAAAGCTCTGTATTTTCTGCTTTCTTCATGAAAGTAAATGGTGAGGTGTACTTTTATAATATATTGACTCAAATCATGTTTTACTCAGACTAAGTTTTCATTATATTCATTGCTCTCCATGCAATTTGCATTGCAGAGTCTGCATTGTGTGGCTTCAGACTCACTCTTTTATATTGCATTGGGTGATAAATATATGCATTATTTTCTTCCTTTATCTTTCCTAACATTGAAATTCAGCTTGGTTTTCTGTGTTTGTAACTTAAAACTTCATCCTTCATTCAACTTGACGTTTTCTGTCTTTTTTGTCTGTATTATAGCCACGTCACCGGTTGACTTAAACTTGCCATCTTTGAAAGGTAGGTCTTACTGAAATAGGCTGCAAAACTGTAGAACTTGCATGATGTTATCATTCTCTCCTGTAATAATATCTGCTTAACTGTGACTTCAGCAATTATTTCTGACCTATCATAAATGCATATTAAAAAAAAAAAAAAAAGTACAGGTGTATTTATCCGACTGTGTATAAAGTATTTTTGTATGATTTTACTTAGATTGCTTGAAAATTTGTACTCATGCTTATATTCATCCTAGCCCTGTGGTGGTGGTATTGCTGCTGCCTTCTGTTGGTTACTGCATTGGCATTCAATGGGACTTCCTTATGAAAATAAAATCTAGTAAAAATTATAGAGAGACAACCTCTATATTTACAAAATGTCGGTGTGAATAAGGGCATGTAAAGCAGGATAATTCTGCAAGATTTGTTTATCTTTACCATGACTGCCATGCCAGTTACATGTGCAGTGCCTATCTGGTCTTTCAGTGGTGAATACCACGTGGAGACCTGTGCCCGACCCACCCTGCTTCACACTGCGCTATGTATTTAAGCTGTTAGGAATTGTGAACTGGGGAAGCTGATGCTCTTTTCCCTCCCATAGCCTTTTCATATGAACTGTAGCATTTGACAAGTGGGATGGGCTGGGGTAAGTGCTGAGGTATTAATAGCAGCTGAAACTCATCTATTCTGAGCTCTGAGAAAGAGGGGAAGAACACTGATGGTAGGAAACCTGTTCATTTTACAGCTTTTAGAAAACCTATTAATATAAGTGATTTGTGGTGAGCTTTGTGTATTACTCCAGAAGGCCTGTGACAGACAGAGAAAAAGTAAGAATGCGGGAGAAGTAATCTCTGCAATAAATAACATCTAGAACTCTTGTCTCCCCTTTTAG
Seq C2 exon
ATTCCTGTCGTGTGTCTGAAAACTCAGATGTTCTAAAAGAGAAAGAAAACAAAGGGTTTTTCAGCTTTTTTCAACGAAGCAAGAAAAAGAGAGAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011068:ENSGALT00000018021:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.515
Domain overlap (PFAM):
C1:
PF094695=Cobl=PU(59.5=61.0)
A:
NA
C2:
PF094695=Cobl=PD(39.2=93.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]