DreINT0007178 @ danRer10
Intron Retention
Gene
ENSDARG00000102829 | COBLL1 (2 of 2)
Description
cordon-bleu WH2 repeat protein-like 1 [Source:HGNC Symbol;Acc:HGNC:23571]
Coordinates
chr9:50468997-50469910:+
Coord C1 exon
chr9:50468997-50469222
Coord A exon
chr9:50469223-50469850
Coord C2 exon
chr9:50469851-50469910
Length
628 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
GTTTGTGTTTTCTCTTGCAGTTA
3' ss Score
11.61
Exon sequences
Seq C1 exon
GCCACTGTGCGATTAGTGATCAACTACAGAAAAACCCAGAAAACCATCCTGCGAGTGAGTCCTCGAGTTCCTCTGCGCGAGCTGCTCCCGGCGATCTGCCAGAAGTGTGAGTTTGACCCGCAGACCACACTTTTATCACCAAGCGTCCAATCAGAAGACACACTGGACCTGAGCGGATCCCTCAATGACTTCGGCCTGAGGGAAGTGTACGCAAGAGACACTAGAG
Seq A exon
GTAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGTGTCTGTCTGTGTGTCTGTCTGTGTGTCTGTCTGTGTGTCTGTGTGCGTGTGTGCGTGTTTGCACATCAGGACACAAATCTGTATAATGACATGGGTATGACACAGGTATTACAAAAAGGAGGTGAAATATGAGGACATTGGTGACGTCCTCATTCCTCAAAAAGCTTATAAATCCCACAGAATGAGTTTAATCAGAGAGTAAAGCTGCACACAGTCTCCTGTGATGGTTGGGTTTATTGTTGGGGTGGGGTGAGGGCAATATAATATACGGTTTGAACAGTATAAAATGAATGGAAACCTATGTAATGTCCCCACTTTTCACAAAAACAAGTGTGTGTGTGTGCGTGTGCATGCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATGCGTGTGTGCATGCGTGCGTGCGTGTGTGCGTGTGTGCGTGCGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTTTATGCTGACTTTATTAAAATGACCCATATGAAGTCATGCAAGACCAGTTTAGAGGTGACATTGAGTTTTTTACTCTACTGTACTCTTGTGTTTGTGTTTTCTCTTGCAG
Seq C2 exon
TTATTAGTCCTGTAAGTCCTATCAGTCCAGTCAGTCTTCCTCCATCTCCAACTCGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102829:ENSDART00000162990:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.118 A=NA C2=0.732
Domain overlap (PFAM):
C1:
PF094695=Cobl=PU(45.9=59.2)
A:
NA
C2:
PF094695=Cobl=FE(19.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACTGTGCGATTAGTGATCA
R:
CTGAGCGAGTTGGAGATGGAG
Band lengths:
286-914
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]