GgaINT0046139 @ galGal4
Intron Retention
Gene
ENSGALG00000011068 | COBLL1
Description
cordon-bleu WH2 repeat protein-like 1 [Source:HGNC Symbol;Acc:HGNC:23571]
Coordinates
chr7:19592357-19593983:+
Coord C1 exon
chr7:19592357-19592585
Coord A exon
chr7:19592586-19593944
Coord C2 exon
chr7:19593945-19593983
Length
1359 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
CTTTTTTGTCTGTATTATAGCCA
3' ss Score
8.23
Exon sequences
Seq C1 exon
CAAACAGTAAGGGTAGTGATAAACTACAAGAAGACACAGAAGACAGTAGTAAGAGTTAGTCCATATTCACCGCTTCAGGAACTCATACCAATTATCTGTAGTAAATGTGAATTTGATCCTTCACACACTGTGTTACTGAAGAATTACCAGTCTCAAGAAGCCCTTGATGTGACAAAATCTCTTAATGATCTTGGACTAAGAGAATTATATGCCATGGATATCAGTCGAG
Seq A exon
GTAAGAAAACTTAAGATATCTTTGATAACTTGTTATTGAAAAGATAATTACATAATATTTCCATAATATATACTTCTTGCTTTGGTGCAAGTGGGTTTGGTTTTGTTTGTTTTGTTAAAAAAAAAAAAAAAGCAACTCATGAAGAAATTAATTTCACACAATTTAGTATATGCTTAATTGATCTCCCACAAAATTGAAACTGTGGGACAAGCATACCTTTACTTATCCCAAGGAAATAGGATGGGTGGTCAAGTACAAAGCATCCTCTAAAAAAGAAATCCCTTTCTCTCCCCTGCCTTTTCTGAGAAAATACCAATAATGCTGTATTTCCCTTAGCTTATAGAGAAGGTGTAGGATTGTGATGAGCTGAGAACAGAAATATCATAGAAACGTAGCTTTGTTCTATAATTTTGAAATATTAGAATACTGTGATAATGCTTTTCAGTGCAATTTGAGTATTGTTTGGTAATTTCACATAAAGATAATGAAGGAACAATAATTGTGTTTTTAATCATGGTCCAACAGGGACTGTATTAACTAATTTGCTGATATTTGTGTCCACATTCTATTTCTGGTTGTCAGTACAGCTGTAAGACTGTCTTTATTGTGCCACGATGAAAAATTACTTCCCAAAGGCCAGTTATCTTGAACTGCAGGAGAATGTCAGATTTGGAAATTACGCTCCCTTTCCATGGAGAAAACCATAACAAAATATTTTTTTTTGTCACAGGAAAAAAACAACAACAACAACAACAACAACAAAAAACCTGTTGCCTAAATGTGCACATAGTTCAAACAACACCCATAGTGAATTATCTTTTCTGTCATCTGACTACCACTTTCTTCTACAGACTGGCAGAGCTGCCTTTGATGCAGCATGAACTGCATACTGCATTCGTTTGAATGAAGTAACAGCCAAAAATCCTGAGAGGATGCAAGGGAATACACACTTCCCACAAGGCAGTGCCCCACTAGGAAGTTCAGATATACTACAACTCATTCCATACCAAGTAGTTTAGCATTTCCATTTTGCGTACAACTTAAAAGCTCTGTATTTTCTGCTTTCTTCATGAAAGTAAATGGTGAGGTGTACTTTTATAATATATTGACTCAAATCATGTTTTACTCAGACTAAGTTTTCATTATATTCATTGCTCTCCATGCAATTTGCATTGCAGAGTCTGCATTGTGTGGCTTCAGACTCACTCTTTTATATTGCATTGGGTGATAAATATATGCATTATTTTCTTCCTTTATCTTTCCTAACATTGAAATTCAGCTTGGTTTTCTGTGTTTGTAACTTAAAACTTCATCCTTCATTCAACTTGACGTTTTCTGTCTTTTTTGTCTGTATTATAG
Seq C2 exon
CCACGTCACCGGTTGACTTAAACTTGCCATCTTTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011068:ENSGALT00000018021:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.429
Domain overlap (PFAM):
C1:
PF094695=Cobl=PU(51.1=61.0)
A:
NA
C2:
PF094695=Cobl=FE(14.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGATAAACTACAAGAAGACACAGA
R:
CTTTCAAAGATGGCAAGTTTAAGTCA
Band lengths:
254-1613
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]