MmuEX0012049 @ mm10
Exon Skipping
Gene
ENSMUSG00000034903 | Cobll1
Description
Cobl-like 1 [Source:MGI Symbol;Acc:MGI:2442894]
Coordinates
chr2:65126208-65133807:-
Coord C1 exon
chr2:65133579-65133807
Coord A exon
chr2:65132496-65132534
Coord C2 exon
chr2:65126208-65126305
Length
39 bp
Sequences
Splice sites
3' ss Seq
TTCACTCCCTCTTGCTGTAGCCC
3' ss Score
8.79
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
AAAACTGTGAGAGTAGTGATCAACTTTAAGAAAACACAGAAGACCATAGTGAGAGTTAGTCCCCACGCACCCCTTCAAGATCTTGCTCCCATCATATGCAGTAAATGTGAGTTTGATCCGTTGCATACCGTGCTGTTGAAGGATTACCAGGCTCAGGAGCCCCTCGACTTGACAAAATCTCTTAATGACTTGGGACTAAGAGAGTTATATGCCATGGATATCAGCAGAG
Seq A exon
CCCCCTCTGCCACTGCCTTCAGTAAGTCATCTTTCCAAG
Seq C2 exon
AGTCCTGCCAAATATCACACAACCCGGACATTGTGAAGGAGAAAGAAAACAAAGGGATTTTCAGTTTTTTCCAACGCAGCAAGAAAAAGCGAGAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034903_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.329
Domain overlap (PFAM):
C1:
PF094695=Cobl=PU(59.5=61.0)
A:
PF094695=Cobl=FE(14.1=100)
C2:
PF094695=Cobl=PD(39.2=93.9)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATTACCAGGCTCAGGAGC
R:
CACAATGTCCGGGTTGTGTGA
Band lengths:
125-164
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types