BtaEX0000213 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr2:31647622-31654189:+
Coord C1 exon
chr2:31647622-31647850
Coord A exon
chr2:31648716-31648754
Coord C2 exon
chr2:31654092-31654189
Length
39 bp
Sequences
Splice sites
3' ss Seq
TTTACTCCCTCCTTCTGTAGCCA
3' ss Score
9.62
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
AAAACTGTGAGAGTAGTGATCAATTTTAAGAAAACGCAGAAGACAATAGTAAGAGTTAGCCCACATGCACCTCTTCAAGAACTTATCGCCATTATATGCAGCAAATGTGAGTTTGATCCATTACACACACAGTTATTGAAGGACTATCAGTCTCAGGAGCCCCTTGACTTGACAAAATCTCTTAATGAACTGGGACTGAGGGAATTATATGCCATCGATGTCAGCAAAG
Seq A exon
CCACTTCTGTTACTGCCTTCAACAAGTCATCTTTACAAG
Seq C2 exon
AGTCCTGCCAAATATCACAAAACCTAGACCTTATGAAGGATAAAGAAAGTAAAGGGTTTTTCAGCTTATTTCAACGCAGTAAGAAAAAGCGGGAGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005501_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.106
Domain overlap (PFAM):
C1:
PF094695=Cobl=PU(59.5=61.0)
A:
PF094695=Cobl=FE(14.1=100)
C2:
PF094695=Cobl=PD(39.2=93.9)
Main Inclusion Isoform:
ENSBTAT00000007231fB46
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCCATCGATGTCAGCAAAG
R:
TCCCGCTTTTTCTTACTGCGT
Band lengths:
115-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development