DreEX0002983 @ danRer10
Exon Skipping
Gene
ENSDARG00000009194 | COL25A1
Description
collagen, type XXV, alpha 1 [Source:HGNC Symbol;Acc:HGNC:18603]
Coordinates
chr19:38924841-38928685:-
Coord C1 exon
chr19:38928614-38928685
Coord A exon
chr19:38926389-38926442
Coord C2 exon
chr19:38924841-38924876
Length
54 bp
Sequences
Splice sites
3' ss Seq
ACCTCAGTTCCTTCTTACAGGGT
3' ss Score
9.29
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GGGCCTCCTGGACCACCGGGCCCTCCAGGTCCTCCAGGCCCCCAGGGCTTTACTGGAATCCCAGGCCCACAG
Seq A exon
GGTATCCCTGGCAACGATGGCTTACCAGGGAAAGCGGGTCCACCGGGCCAAGCA
Seq C2 exon
AATCTCCTTCCTCAGGATTCAGCTTCTCCAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009194_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.753 A=1.000 C2=0.755
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(36.5=100)
A:
PF0139113=Collagen=FE(27.0=100)
C2:
PF0139113=Collagen=PD(0.1=0.0),PF0139113=Collagen=PU(13.6=50.0)
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCAGGTCCTCCAGGC
R:
TCCTGGAGAAGCTGAATCCTGA
Band lengths:
84-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]