DreEX0003357 @ danRer10
Exon Skipping
Gene
ENSDARG00000103129 | CU207219.1
Description
NA
Coordinates
chr11:44315433-44318510:+
Coord C1 exon
chr11:44315433-44315570
Coord A exon
chr11:44317841-44317969
Coord C2 exon
chr11:44318367-44318510
Length
129 bp
Sequences
Splice sites
3' ss Seq
ATATTGTGACTTTGTGTCAGATG
3' ss Score
5.88
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
GTGGAGTCCCGGAGCAGAATCCGTGTTTTACCGGTAGACACGGCTGTGACACTAATGCCGTCTGCCGGCCGGCGCAGGGGAAAGACTTCAGCTGTGAGTGCGCCGCTGGATTCTCTGGAGACGGACGCGTGTGTTACG
Seq A exon
ATGTGGACGAGTGTTCAGAAAGCCCTCATGTCTGCGGAGCGTTCGCTATCTGCAGTAATCAGCCGGGGAGTTTCCGCTGTGAGTGTCTGGACGGGTTTCAGTTCGCTGCAGACGGACGGACATGTGTTG
Seq C2 exon
AAACCGAGCGTCCTGTGGATCACTGTCAGAGAGGAACACACGACTGCGACGCTCCAGAAAGAGCCAGATGCAGATACACCGGCGCCTCATCCTACATCTGCGCATGTCTGACCGGCTTCACTGGAGATGGACGAGTCTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103129_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=WD(100=78.7),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.5)
C2:
PF129472=EGF_3=WD(100=79.6),PF0764510=EGF_CA=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTTACCGGTAGACACGGC
R:
CTCGTCCATCTCCAGTGAAGC
Band lengths:
250-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]