DreEX0003581 @ danRer10
Exon Skipping
Gene
ENSDARG00000063578 | DGKI
Description
diacylglycerol kinase, iota [Source:HGNC Symbol;Acc:HGNC:2855]
Coordinates
chr4:4626714-4638002:-
Coord C1 exon
chr4:4637907-4638002
Coord A exon
chr4:4632403-4632516
Coord C2 exon
chr4:4626714-4626913
Length
114 bp
Sequences
Splice sites
3' ss Seq
TGGTTTTCCTGTTTGTTCAGGTG
3' ss Score
8.93
5' ss Seq
GGTGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
GAATCTAAATGGCGTCCATTCATGCTGAAGCCGCTGCCGTCACCGCTGATGAAACCAGTGCTGGTGTTCGTCAACCCGAAAAGTGGAGGAAACCAG
Seq A exon
GTGGGCTGGATTCTGTCGGCTTTAGATGAGCTTCAGATGAACCCTCAGCCTCCTGTGGCGGTACTTCCTCTTGGAACAGGAAATGACCTTGCTAGGACACTCAACTGGGGAGGT
Seq C2 exon
GCGGCGCTGCAGGTTGGTGGTCATGGGGATCGTCTCCATCAGTGTCGAGAGGTGCTCATCACCACCTTCAAGACTCTGCCAGTGCAGGTAGATGGAGAGCCGTGCCGTCTGGCGCCCTCCACCCTGCGCATCTCTCTGAGGAACCAGGCCAACATGGTGCAGAAGAGCAAGAGACGCACATCTGTACCGCTGCTCAATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063578_MULTIEX1-3/9=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=0.079 C2=0.015
Domain overlap (PFAM):
C1:
PF0078119=DAGK_cat=PU(10.4=40.6)
A:
PF0078119=DAGK_cat=FE(29.6=100)
C2:
PF0060914=DAGK_acc=PD(20.9=49.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCGTCCATTCATGCTGAAG
R:
TGCTCTTCTGCACCATGTTGG
Band lengths:
256-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]