DreEX0003640 @ danRer10
Exon Skipping
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27749530-27752392:+
Coord C1 exon
chr5:27749530-27749702
Coord A exon
chr5:27752055-27752148
Coord C2 exon
chr5:27752228-27752392
Length
94 bp
Sequences
Splice sites
3' ss Seq
ATCTCTTATTTTGTTCCCAGGTT
3' ss Score
9.51
5' ss Seq
ATGGTATGC
5' ss Score
7.14
Exon sequences
Seq C1 exon
CCCTTTGAGGAGTGCATCCGAAACATCTGTGACAAGCTGACGTTTTGCACTCTGGAGCTGTACAAAACCATAATTAAGGATTTACCGCCAACACCTTCCAAGTTCCACTACATCTTTAACCTGAGAGATCTCTCCAGAGTCTACCATGGCCTGACGCTGACCAACCCTGAGAG
Seq A exon
GTTCTGCACAGTCACCCAGTTTGTTCGTGTTTGGAGGAATGAATGTTTAAGGGTCTTTCATGACAGACTTATCAATGAAACTGACAAAATCATG
Seq C2 exon
GTCCAAGGACATGTAAAGAATCTGGTTGAAGAACACTTCAAATCAGACCTGGATTCAGCCATGAGAGATCCAATTCTGTTTGGCGATTATAGAACAGCTCTTAAATCTGAGCCAAGGGTTTATGAGGATATACTGGACTATGATGCATCCAAAGCTCTGTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486-'53-50,'53-49,54-50
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(21.0=100)
A:
PF127752=AAA_7=PD(5.1=43.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAGTCTACCATGGCCTGA
R:
TCCTCATAAACCCTTGGCTCAGA
Band lengths:
168-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]