MmuEX6021060 @ mm9
Exon Skipping
Gene
ENSMUSG00000038011 | Dnahc10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:125282083-125284351:+
Coord C1 exon
chr5:125282083-125282255
Coord A exon
chr5:125283678-125283771
Coord C2 exon
chr5:125284184-125284351
Length
94 bp
Sequences
Splice sites
3' ss Seq
ATCGTCCTTCTCCTATGTAGGTT
3' ss Score
9.44
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
ACCTTTAACGAGAGCATCGGCGGCGTGAGCAGGAAGCTGACATTTTGCACATTAACACTTTACAAAAACATCGTTCAAGATCTGCCTCCCACCCCTTCCAAGTTCCATTACATCTTCAACCTCCGAGACCTCTCCAGGGTTTTTAATGGCCTTGTCCTTACTAATCCAGATCG
Seq A exon
GTTTCAGACAGTGTCCCAGATGGTGAGGGTGTGGAGAAATGAGTGCTTGCGGGTTTTCCATGACCGGCTCATCAACGAAGTAGACAAGGAGCTG
Seq C2 exon
GTGCAAAATCACATAGGGAACTTGGTGACGGAGCATTTTAACGATGACTTCGAGATGGTGATGAGGGATCCCATCCTGTTCGGGGACTTCCGGTTGGCTCTGCAAGAGGGGGAGCCACGCATTTATGAAGACATCCAGGACTACGAGGCCGCCAAGGCACTGTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-'48-51,'48-50,49-51=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(21.2=100)
A:
PF127752=AAA_7=PD(5.2=43.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTCAAGATCTGCCTCCCAC
R:
GGATGGGATCCCTCATCACCA
Band lengths:
178-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: