GgaEX0004151 @ galGal4
Exon Skipping
Gene
ENSGALG00000003170 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr15:4876422-4877733:-
Coord C1 exon
chr15:4877561-4877733
Coord A exon
chr15:4877102-4877195
Coord C2 exon
chr15:4876422-4876589
Length
94 bp
Sequences
Splice sites
3' ss Seq
ATATTTTGATATTAATGCAGGTT
3' ss Score
5.47
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
GAGTTTAATGAGTCTATATCAGCCATCTCTGAGACCATAACAGTATGCACCTTGGAGCTTTATAAAAGGATTGTCTGTGACCTACCCCCTACTCCTTCCAAATTCCATTACATTTTTAACCTGCGAGACCTTTCCAGAGTCTATAATGGACTTATTCTTACAACCCCAGAGAG
Seq A exon
GTTTCAAACAGTCACCCAGATGGTGAGAGTTTGGAGAAATGAGTGCCTGAGGGTTTTCCATGACAGATTGATTAATGAAGCAGATAAGGCTTTG
Seq C2 exon
GTACAAGGACATATCAAAAACCTGATTGAAGAGAATTTCAACGATGAGTTGGAACAGGCTATGAGGGATCCTATTCTTTTTGGAGATTTCAGGATGGCACTGAATGAAGGAGAGCCTCGTATTTATGAAGATATACAAGCCTATGATGTGGCAAAAAATCTCTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170-'52-60,'52-59,53-60
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(21.0=100)
A:
PF127752=AAA_7=PD(5.1=43.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGAGACCTTTCCAGAGTCT
R:
GGCTCTCCTTCATTCAGTGCC
Band lengths:
168-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]