GgaEX0004151 @ galGal3
Exon Skipping
Gene
ENSGALG00000003170 | DNAH10
Description
NA
Coordinates
chr15:4923084-4924395:-
Coord C1 exon
chr15:4924223-4924395
Coord A exon
chr15:4923764-4923857
Coord C2 exon
chr15:4923084-4923251
Length
94 bp
Sequences
Splice sites
3' ss Seq
ATATTTTGATATTAATGCAGGTT
3' ss Score
5.47
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
GAGTTTAATGAGTCTATATCAGCCATCTCTGAGACCATAACAGTATGCACCTTGGAGCTTTATAAAAGGATTGTCTGTGACCTACCCCCTACTCCTTCCAAATTCCATTACATTTTTAACCTGCGAGACCTTTCCAGAGTCTATAATGGACTTATTCTTACAACCCCAGAGAG
Seq A exon
GTTTCAAACAGTCACCCAGATGGTGAGAGTTTGGAGAAATGAGTGCCTGAGGGTTTTCCATGACAGATTGATTAATGAAGCAGATAAGGCTTTG
Seq C2 exon
GTACAAGGACATATCAAAAACCTGATTGAAGAGAATTTCAACGATGAGTTGGAACAGGCTATGAGGGATCCTATTCTTTTTGGAGATTTCAGGATGGCACTGAATGAAGGAGAGCCTCGTATTTATGAAGATATACAAGCCTATGATGTGGCAAAAAATCTCTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170_CASSETTE7
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(21.0=100)
A:
PF127752=AAA_7=PD(5.1=43.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGAGACCTTTCCAGAGTCT
R:
GGCTCTCCTTCATTCAGTGCC
Band lengths:
168-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]