HsaEX6069944 @ hg19
Exon Skipping
Gene
ENSG00000197653 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:2941]
Coordinates
chr12:124362283-124364348:+
Coord C1 exon
chr12:124362283-124362455
Coord A exon
chr12:124363811-124363904
Coord C2 exon
chr12:124364181-124364348
Length
94 bp
Sequences
Splice sites
3' ss Seq
TTGTCCCTTCCATTCTGCAGATT
3' ss Score
9.83
5' ss Seq
CTGGTCAGT
5' ss Score
6.6
Exon sequences
Seq C1 exon
ACGTTTCATGAGAGCATTGTGGCTGTGAGTGGCAAGCTGACATTCTGCACGCTAGCACTTTACAAAAATATTGTGCAAGACCTACCTCCCACTCCGTCAAAGTTCCATTACATCTTCAACCTTCGAGATCTCTCACGGGTTTTTAATGGTCTTGTCCTCACTAACCCGGAGCG
Seq A exon
ATTCCAGACGGTGGCCCAGATGGTGAGAGTCTGGAGGAATGAGTGTCTGAGAGTCTTCCACGACCGGCTGATCAGTGAAACAGACAAGCAGCTG
Seq C2 exon
GTACAACAGCACATAGGCAGCTTGGTTGTGGAACATTTTAAAGATGACGTGGAGGTGGTGATGAGGGATCCCATATTGTTTGGAGACTTCCAGATGGCTCTGCACGAAGGAGAACCACGCATTTATGAAGACATCCAGGACTACGAGGCGGCCAAGGCTCTGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653-'51-53,'51-52,52-53=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(21.0=100)
A:
PF127752=AAA_7=PD(5.1=43.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGCAAGACCTACCTCCCA
R:
GATCCCTCATCACCACCTCCA
Band lengths:
173-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)