DreEX0003645 @ danRer10
Exon Skipping
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27714925-27718435:+
Coord C1 exon
chr5:27714925-27715115
Coord A exon
chr5:27717929-27718127
Coord C2 exon
chr5:27718241-27718435
Length
199 bp
Sequences
Splice sites
3' ss Seq
CGTTCTTTGATATTATGCAGAGA
3' ss Score
6.45
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
AACCTTGTCACAGGAGTGGATTTTAAAGTGGTCTTGGAAACTATTCCAGAACTGATAAATGGGCTGCGTATGATATGGATATTGTCTAGGTGTTACAACACAGATGAGCGCATGGAAGCTTTGATGGAACGCATTGCCTGGGAACTGTCTGAACGGGTTGCCAGAGTTGTGGATGTCCATGTTCTGTTTAA
Seq A exon
AGAGAAGAGGGTGGTGGCCAAAGCCAAGGTTCAGGATGGAAAGCGCGTTTTAGATATATGGAAGGCCTGTTATTTTGAGGTTCGTGCACGGATTGAGAATTCCGAACGTGATCCCCGCTGGGAATTTAATCGCAGAAAGCTCTTCGAAAAGACAGACTATATGGCTTCGATCTGTCAGGACTTATATTCCGTCTTGCAG
Seq C2 exon
ACTCTGGACGAGTTCTACATTATCTTTGGACCAGAGTTAAAAGCAGTGACGGGGGATCCTAAGCGAATCGATGATGTTTTACACTGTGTAAACTCCCTGGTCAAGCCCATCGAGGAAGTTACTTTTGATCCTTTTGACAACCGCAAAATGACCAGCTGGAAAATGGTCATGCAGGAATTTAACAATGAAGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486-'8-10,'8-9,10-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(10.7=100)
A:
PF083857=DHC_N1=FE(11.2=100)
C2:
PF083857=DHC_N1=FE(10.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACAGATGAGCGCATGGAAG
R:
CAGCTGGTCATTTTGCGGTTG
Band lengths:
252-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]