GgaEX0004140 @ galGal4
Exon Skipping
Gene
ENSGALG00000003170 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr15:4899697-4901498:-
Coord C1 exon
chr15:4901308-4901498
Coord A exon
chr15:4900645-4900843
Coord C2 exon
chr15:4899697-4899891
Length
199 bp
Sequences
Splice sites
3' ss Seq
TCTTTTGATTTGATTAATAGAGA
3' ss Score
4.35
5' ss Seq
CAGGTAGTT
5' ss Score
6.3
Exon sequences
Seq C1 exon
AATTTAACACATGGCACGGGGTTTCATGTTGTCTTGGATACAATTCCTTCACTGATGAATGCCTTAAGAATGGTATGGATTATCTCACGGCATTACAACACAGACGAAAGGATGGCACCCCTCATGGAAAGAATTGCTTGGGAAATTTCAAATCGAGTGTGCAAAGTTGTGGATTTGCATACACTATTTAA
Seq A exon
AGAAGATAGAGCTGCTGCAAAAAAGAAAATAGCAGAGGCCAAAAGTACTCTTGAACAGTGGAAGAAATCTTATTTTGCTGTTCGTGCCCAGATTGAAGCATCAGGAAGAGAGCAACACTGGGAATTTGACCGAAAACTTTTATTTGGGAAAACAGATAATATGACTTCAGTCTGTCAAGATCTGTATGACATTTTGCAG
Seq C2 exon
GTCACTGAAGAGTTTCACAATGTATTTGGTTCTGAAATGAAAGCTGTCACAGGTGATCCAAAGTACGTTGATGATCTTCTGAGAAGAGTGGTTGAACTAACTAGTCCAATGGAAGAGCTGGCTTTTGACCCTTTTAGCCTTGAAGGTGCACATGACTGGAAATTAATTATGGAAGAATTTAAAGTGGGAGTTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170_CASSETTE12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(20.5=100)
A:
PF083857=DHC_N1=FE(21.5=100)
C2:
PF083857=DHC_N1=FE(21.8=100),PF083857=DHC_N1=PU(1.8=5.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGGATGGCACCCCTCATG
R:
GTCATGTGCACCTTCAAGGCT
Band lengths:
242-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]