MmuEX6021098 @ mm10
Exon Skipping
Gene
ENSMUSG00000038011 | Dnah10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:124741888-124746737:+
Coord C1 exon
chr5:124741888-124742078
Coord A exon
chr5:124743531-124743729
Coord C2 exon
chr5:124746543-124746737
Length
199 bp
Sequences
Splice sites
3' ss Seq
GGCCTCTCTTTGTTTAACAGGGA
3' ss Score
9.23
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
AACATCACACATGGCTCCAGCTTTCACGTGGTCCTGGACACCATTCCCTCCATGATGAGCGCTCTGCGCATGGTGTGGATCATTTCTAGACACTACAACAGAGACGAGAGGATGATCCCACTCATGGAACGCATCGCCTGGGAGATTGCTGAGCGCGTGTGCCGAGTCATCAACCTACGCACCCTGTTCAA
Seq A exon
GGAAAACCGAGCAAACGCGCAGTTCAAGACCCAGGAGGCTAGAAACACTCTCAAGCTATGGAAAAAATCTTACTTCGATATTCGGGCCAAGATTGAGGCTTCTGGTCGGGAGGCACGATGGGAGTTTGACCGGAAGCGATTGTTTGAGAGAACAGACTACATGGCCAACATCTGCCAGGACCTTTCAGATGTTCTGCAG
Seq C2 exon
GTCTTGGAAGAATTTTACAACATATTTGGCCCAGAGCTCAAGGCTGTGACAGGGGACCCCAAGAGAATCGACGATGTCCTTGGCCGGGTAGACAGCTTGGTGGCTCCTATGGAAAGCCTGAGCTTTGATCCATTCAGCATCAGATCCTCCCCATACTGGAAATACGTGATGGAGGACTTCAAGCTTGAAGTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-'6-17,'6-11,11-17=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(10.9=100)
A:
PF083857=DHC_N1=FE(11.4=100)
C2:
PF083857=DHC_N1=FE(21.1=100),PF083857=DHC_N1=PU(4.0=13.8)
Main Skipping Isoform:
ENSMUST00000058440fB8891
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCACACATGGCTCCAGCTT
R:
ATTCTCTTGGGGTCCCCTGTC
Band lengths:
257-456
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types