HsaEX6069977 @ hg19
Exon Skipping
Gene
ENSG00000197653 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:2941]
Coordinates
chr12:124270293-124274668:+
Coord C1 exon
chr12:124270293-124270483
Coord A exon
chr12:124272351-124272549
Coord C2 exon
chr12:124274474-124274668
Length
199 bp
Sequences
Splice sites
3' ss Seq
GGCATCTCTTGGCTTCGCAGAGA
3' ss Score
7.12
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
AACATAACGCACGGGTCTGGCTTCCACGTGGTCCTGGACACCATCCCCGCCATGATGAGTGCCCTGCGGATGGTGTGGATCATCTCCCGACACTACAACAAAGACGAGAGGATGATTCCGCTCATGGAGCGCATCGCCTGGGAAATCGCTGAGAGAGTCTGCCGAGTGGTCAACCTGCGGACTTTGTTCAA
Seq A exon
AGAAAATCGAGCGAGTGCCCAAAGCAAAACCTTGGAAGCCAGGAACACCCTCAGGCTGTGGAAAAAGGCCTATTTTGACACCCGGGCCAAGATAGAGGCTTCGGGGAGGGAAGATCGGTGGGAGTTTGACCGGAAGCGGCTGTTCGAGAGGACGGATTATATGGCCACCATCTGCCAGGACCTCTCCGACGTTCTGCAG
Seq C2 exon
ATTTTGGAGGAATTTTATAACATATTTGGTCCAGAACTAAAGGCAGTGACGGGGGACCCCAAGCGCATTGATGATGTCCTATGCAGAGTGGACGGCCTAGTCACCCCCATGGAAAACCTGACCTTTGACCCCTTCAGCATCAAGTCCTCCCAGTTCTGGAAATATGTGATGGATGAATTCAAGATTGAAGTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653-'8-10,'8-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(20.7=100)
A:
PF083857=DHC_N1=FE(21.7=100)
C2:
PF083857=DHC_N1=FE(21.1=100),PF083857=DHC_N1=PU(1.8=6.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGATGGTGTGGATCATCTC
R:
CAGGTTTTCCATGGGGGTGAC
Band lengths:
246-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)