GgaEX0004140 @ galGal3
Exon Skipping
Gene
ENSGALG00000003170 | DNAH10
Description
NA
Coordinates
chr15:4946453-4948882:-
Coord C1 exon
chr15:4948692-4948882
Coord A exon
chr15:4948029-4948136
Coord C2 exon
chr15:4946453-4946553
Length
108 bp
Sequences
Splice sites
3' ss Seq
ATTTTGCTGTTCGTGCCCAGATT
3' ss Score
8.08
5' ss Seq
CAGGTAGTT
5' ss Score
6.3
Exon sequences
Seq C1 exon
AATTTAACACATGGCACGGGGTTTCATGTTGTCTTGGATACAATTCCTTCACTGATGAATGCCTTAAGAATGGTATGGATTATCTCACGGCATTACAACACAGACGAAAGGATGGCACCCCTCATGGAAAGAATTGCTTGGGAAATTTCAAATCGAGTGTGCAAAGTTGTGGATTTGCATACACTATTTAA
Seq A exon
ATTGAAGCATCAGGAAGAGAGCAACACTGGGAATTTGACCGAAAACTTTTATTTGGGAAAACAGATAATATGACTTCAGTCTGTCAAGATCTGTATGACATTTTGCAG
Seq C2 exon
GTCACTGAAGAGTTTCACAATGTATTTGGTTCTGAAATGAAAGCTGTCACAGGTGATCCAAAGTACGTTGATGATCTTCTGAGAAGAGTGGTTGAACTAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170-'3-5,'3-3,4-5
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(11.0=100)
A:
PF083857=DHC_N1=FE(11.5=100)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAACACATGGCACGGGGTTTC
R:
ACTTTGGATCACCTGTGACAGC
Band lengths:
251-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]