DreEX0003689 @ danRer10
Exon Skipping
Gene
ENSDARG00000056888 | DNAH8
Description
dynein, axonemal, heavy chain 8 [Source:HGNC Symbol;Acc:HGNC:2952]
Coordinates
chr24:33741057-33745212:+
Coord C1 exon
chr24:33741057-33741244
Coord A exon
chr24:33744431-33744625
Coord C2 exon
chr24:33745078-33745212
Length
195 bp
Sequences
Splice sites
3' ss Seq
ATATATATTTTTATTCATAGAAT
3' ss Score
6.76
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
GATTAGCCCAGTCTGGCGCATGGGGCTGTTTTGATGAGTTCAACCGCATTGAACTGCCTGTGCTCTCGGTAGCTGCTCAACAAATCTACATCGTCCTGCAGTGCAAGAAGAACAAAAAATCTCAGTTTATATTCACAGATGGAGATGTGGTGGATATGGATAAAGAGTTTGGCATTTTCCTTACTATG
Seq A exon
AATCCAGGTTATGCTGGTCGGCAGGAGCTGCCTGAGAATTTGAAAATTCAGTTTCGCACAGTGGCTATGATGGTGCCCGACCGAGCCATCATCATGAGGGTGAAACTCGCCAGCGCAGGTTTTCGGGAAAATCAAGTCCTCAGCCGCAAGTTTTACACTCTGTATAAACTGTGTGAGGAACAGCTTTCCAAACAG
Seq C2 exon
GTCCATTATGACTTTGGCTTGAGGAACATCTTGTCTGTTTTAAGAACGTTGGGTGCTGTTAAGAGGTCCAATCCAACAGAGCCAGAAAAGACTGTGGTCATGAGAGTTCTGCGTGACATGAACCTCTCCAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056888-'40-42,'40-41,41-42
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.044
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(27.9=100)
A:
PF127742=AAA_6=FE(28.8=100)
C2:
PF127742=AAA_6=PD(10.8=53.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGAACTGCCTGTGCTCTCG
R:
ACGCAGAACTCTCATGACCAC
Band lengths:
255-450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]