DreEX0004503 @ danRer10
Exon Skipping
Gene
ENSDARG00000101858 | FQ311894.1
Description
NA
Coordinates
chr13:1579293-1586657:+
Coord C1 exon
chr13:1579293-1579483
Coord A exon
chr13:1583356-1583466
Coord C2 exon
chr13:1586534-1586657
Length
111 bp
Sequences
Splice sites
3' ss Seq
TCCACAACTGTTTCTCACAGACT
3' ss Score
6.72
5' ss Seq
GAGGTACGC
5' ss Score
9.4
Exon sequences
Seq C1 exon
CTAAAGGCAGGACAAACGTGGAGCTGCGGGAGAAGTTCATTCTCCCAGAAGGCACCACGCAGGTGATGGCAAGCTTCCGGTACAGAGGTCGAAGGTCACGGCCGTCCTCACGAGGAGCCTCCCCTAACAGATCCAACTCCAGTCATAGCTGCGCTGCACAGAACAACCCGCTCGCACCAAACACACCCAAG
Seq A exon
ACTCCCCAACATTTAACCCGCAATTATGATAAACCCTGGCTGACAAACAGCAAATCAGCCACCCCTCTTAAATCATCCGACTCCTTTGACAGCCAAGGGTCGTCCAATGAG
Seq C2 exon
AGCACGCCGATTCAGGGCAGCAAGCTTCGTCTTCCAGGATATTTGTCAGGGAAAGGCTTTCAGTCGACAGAGGATGGAGCCCTGATCAATGCTGCGGTCATGAAGGCCAGAGGTCAAGCTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101858_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.781 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSDART00000165987fB406
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTCTCCCAGAAGGCACCAC
R:
TGATCAGGGCTCCATCCTCTG
Band lengths:
242-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]