MmuEX0015775 @ mm9
Exon Skipping
Gene
ENSMUSG00000026131 | Dst
Description
dystonin [Source:MGI Symbol;Acc:MGI:104627]
Coordinates
chr1:34359675-34363496:+
Coord C1 exon
chr1:34359675-34359877
Coord A exon
chr1:34360266-34360376
Coord C2 exon
chr1:34363373-34363496
Length
111 bp
Sequences
Splice sites
3' ss Seq
TGTACCGTTGTTCCATGCAGATT
3' ss Score
9.15
5' ss Seq
GAGGTATCG
5' ss Score
8.1
Exon sequences
Seq C1 exon
CTAAAGGAAGGACCAACATGGAGCTGCGGGAAAAGTTCATCCTAGCAGACGGTGCCAGCCAGGGTATGGCCGCCTTCCGACCGCGAGGCCGCCGATCTCGCCCTTCATCCAGAGGAGCTTCCCCCAACAGATCCACTTCCGCGTCGAGTCATGCCTGCCAGGCAGCCTCCCCACCGGTGCCTGCTGCCGCCAGCACACCCAAG
Seq A exon
ATTCTCCATCCTTTAACACGCAATTATGGTAAACCATGGTTGGCAAACAGCAAAATGTCAACTCCCTGTAAAGCAGCAGAATGCCCCGACTTTCCCGTGTCATCCGCAGAG
Seq C2 exon
GGCACACCAATCCAGGGAAGCAAGCTGCGACTACCCGGGTACCTGTCAGGGAAAGGCTTCCACTCTGGGGAGGACAGCGCCTTGATAACGACGGCAGCCGCCAGAGTCCGAACACAGTTCGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026131-'140-138,'140-137,141-138=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.691 A=0.554 C2=0.956
Domain overlap (PFAM):
C1:
PF0218712=GAS2=PD(2.5=2.9)
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGGACCAACATGGAGCTG
R:
CTGACAGGTACCCGGGTAGTC
Band lengths:
247-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: