MmuINT0053641 @ mm9
Intron Retention
Gene
ENSMUSG00000026131 | Dst
Description
dystonin [Source:MGI Symbol;Acc:MGI:104627]
Coordinates
chr1:34359675-34363496:+
Coord C1 exon
chr1:34359675-34359877
Coord A exon
chr1:34359878-34363372
Coord C2 exon
chr1:34363373-34363496
Length
3495 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
TGCACTGGTCGCACACACAGGGC
3' ss Score
5.16
Exon sequences
Seq C1 exon
CTAAAGGAAGGACCAACATGGAGCTGCGGGAAAAGTTCATCCTAGCAGACGGTGCCAGCCAGGGTATGGCCGCCTTCCGACCGCGAGGCCGCCGATCTCGCCCTTCATCCAGAGGAGCTTCCCCCAACAGATCCACTTCCGCGTCGAGTCATGCCTGCCAGGCAGCCTCCCCACCGGTGCCTGCTGCCGCCAGCACACCCAAG
Seq A exon
GTAGGACTCCAGGCTGTGGCCCTCTCTCCCAGCGCACCCCTCATCCACAGCATCCTGGCAGGTGTTTCATTTCCCTAGTAGTCGTGGACCAGCCACATCCATTTGTATCTCTTCGCTCCATATTTTTAAACGTGTTCTGTCCAATGACCCATGAAGCCATTGTCTGTACAGGGTTACCCATCCAGGGGCTTTGTCGTCTCTCAGGTTGAGTTTTCTGTTTAAAGCTTTATTTTTTTATTAAAAATTTTGGTATTCCGGTTTGTCATCAGCTCTGTCTACCCTTGCCTTCATTACCTGTGTAAAGTGACTCCACGGTGAAGACCTCTTCTCTGTGGCTTTGTTTCTTACTGGCTCCCCTTTACATTTGATGTACCGTTGTTCCATGCAGATTCTCCATCCTTTAACACGCAATTATGGTAAACCATGGTTGGCAAACAGCAAAATGTCAACTCCCTGTAAAGCAGCAGAATGCCCCGACTTTCCCGTGTCATCCGCAGAGGTATCGTAAGGCCCCAGACCGCAGTCTTAACAGCCTTCTCTGGCTGACACTCACCTACTAACACCGCCTCACCACTGCCCTGATGTGTGCACTTCTGATAATACTACATCTTCCTGTTAACTTCCTGCAAAACCGTTTCTCAGGGGACATGAGAGTAAGGGGTACTGGGGAAAGACAGCAGCGGTTTGACATGCCCACACCTTGAGGCTGTATATGCACACTCCTGGGCTTTTGCTCTCTGTATATACAAGGCTTATGAATATTATCTAATGTTGGTGGAATGCACTTTCCAATAGACAATATGAGCTAGAAACTTAGCATGCTCCCTTAGATGAAATCAGAAGCAATGTCATTTGTAGGGGAGTTACTTAGGAACAGAATTTTAGCAAGTGTCCACCATGGATGGTCCCTCTTAGTGCATTCATTTCTGCTTGTTCATGCCGGCCCAGTGTGACGTGGTTCTCAGTTCTAAGTGCAGGCATCACAGGGATAGGGGTGGGAATATGGAAAGCTAACTGTCATTTTCAAAGGATGTCTGTATTATATTTTAGTAATTAATATTACTTGAGCATTCTGTAACGTCTCAAAATTGCCATTGGTACAGAGAGAAGATATTTAGGGAATATAACATTTGCCAAGATTAACTCACATTTAAATTGTTCACATTTCAACTGAAAATCAGCCATCTATTTTTCCAAAGAAACGTCTATGAATTGATCAGTGTGGGCACCGTCTCACGTGCTTGATCCAAACCCCAGTAACAGGGAGGAGTTCCTAGCCATCCTTTCTTGGAAATGAGGAGTTATTTTTGGCCTAATGGTTAGGAAGAAAGCCAAGGCCCTTTAGAAAAGAAGCACTTTTTAAATGCCCATGAGGGTTTTCATGGCTGGTTCCCAGTTACTTAATCCTCACATTAATTACAATAGGTAGACAGAGGAAAGTCCCTTGCCTTCTCTTCTCGGACCCAGTCCCTGAGCAGCCAAGTAGGAAGGCTGAAACAAACACAGACTCCCTTTAAATGTCCCTTCCCTTCTCCTCCTTCCTCTGGGTCCCAAACTCCTACTTGCTCCCACTTGTGGGAGCAGTCATAGATCGCGCCAAGAAATGTCTGAGTTGTTGTGACTCCATTATGTAAAAGCTGAAAAACCCTTGCCCTCAAACCAATGTTTGTTTTAAATGTTTGGGGATAAATTTCTATGTTCACTTTTTTTTTTATTTAAATTTAATTAAAGTAGGGGCTGGGGAAATGGCTTGGTTGGTAAAGTACCCGCTGTACAAACATAAAGACCTGAGTTCATATCCCCAGGACCCACCTAAAAGCAAGGTACTTAGGGTGGAGAATGGCAGATAAAGACAAGCTAGTGAATCAGTGAGACACCCCACAAAAGCAAAGCGGAAGACAGTGAAGGAAGATGACAAGCAGGCCCCGAGGCCTCAGCATGGGCTCACTAGTGCGCATGCCCATGAATAAAGTCCTAAGTCCATTCTCTGAACTCATGTGAAGGTATGTTCAATTTTAAAGGAAGGCCTCACAGAATCTCAAGAGCAGTGTGTGTGCACACAGTAAAGTCCAAGCAGTCACAGGCTAAGGCAGGTGGTCTTGGCTTTCATACGACCCTTAGTGACAGAGTCACAGTAGGTGCTTGCTCCCTCGTGGACAGTTGACATTCCTCCCAAGTGGGCAGTGTGGTGGGTGTGCGGGTTAACTGGCTAATGTATATAAAGGCAGAGTGGGAATGTTTACCTATATAAGTCACACCTAGGTAATATTCTGGAGCTGAGTATGGCTGAGGCATGCCCGAGATTCCAGGACTTGGAGTGTGAAAGGGGGAGGGTCAGAGTTATGGACCAGCCTCAGCTATATAATGAGTTTAAGGCCAACCTGGGCTACATGTATGTTAAAAAATATCACTTGCACATAGTTTTGGGTATAGAGTACACAGGTAGATAGAGGGTAAGAATCATACTAAAACCAACAAATACAAAGCCTGAGGAAAACATCAGTATCAAAAGTCGTACATATGCTCTATTAAGAATTTTCAGTGCTAGCTGGGCAGTGGTGGCTCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATCTCTGAGTTCGAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAAAACAACAACAAAAAAATCAGTGCTAATGAGAAATGGTTCTAAAAACACAGTCATTGTTTTTGTAGATTTGTTTTCTCTGTGGCTCCCTGGCTATGTGTTCATTGGCAGCTAGAAACCCCTGGTACCCAACAGAGCTTTGTTTTAAATTTCAGGAGAATTTCTAAAATGTCACAATGTAGAAACATGGTAAGGTTAGACTTAGCATATTGTCTTAAAATGGCTCCATATGTCTTCCTCAAGTGACTCTTCTAAGTTTGAAAGAAGTGTCTCCAAAGTATTGCCTGTAGGCTGCATGTGGCCAGGCCATCCGGTGTGACGTTGGACGGCCATGCTTCCTTTCTGGGGGGTTTTCCGCCCAAGCTTTCTTATCTCAGGGTTGTTTTCTCTGCCCCCATCGCTCAGTTTCTGTTTAATGTCTGCCTCATTTTTTTCTTAAGCACATTGAAGGCAGCGCACCAGTCAGGCCTAACATCCAGCCCTCTGTCCCCTCCCCTGCACAGTCCCCACCCCAGCGGCCGCTGTTTAACCCTGTAATGATGCCATCTGAGGCACACTGACAACCCACAGTTTGATCAGTCTTGGTTTCCTCACCATGGCTTTTGTGTTTTGTCTTCAATCATGAAACCATTTTCTTTAAAATTTGTCTTTATCCCAGTAAGAATTAAAAAAAAAAAAAAAAGGAGGAGGGGAGCCGGTGGGACCCACACACCTCACTTATCTGAAGCGTGTCCACCTCCTTCAGAGGGCTTGTCTAGATGTCCAACCATAAGCAAAGTGGGACATCCTACAGCGCAGGCAAACTCTTACGTGCTCTCTGCACTGGTCGCACACACAG
Seq C2 exon
GGCACACCAATCCAGGGAAGCAAGCTGCGACTACCCGGGTACCTGTCAGGGAAAGGCTTCCACTCTGGGGAGGACAGCGCCTTGATAACGACGGCAGCCGCCAGAGTCCGAACACAGTTCGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026131-Dst:NM_133833:91
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.691 A=NA C2=0.956
Domain overlap (PFAM):
C1:
PF0218712=GAS2=PD(2.5=2.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: