DreINT0011438 @ danRer10
Intron Retention
Gene
ENSDARG00000101858 | FQ311894.1
Description
NA
Coordinates
chr13:1583356-1586657:+
Coord C1 exon
chr13:1583356-1583466
Coord A exon
chr13:1583467-1586533
Coord C2 exon
chr13:1586534-1586657
Length
3067 bp
Sequences
Splice sites
5' ss Seq
GAGGTACGC
5' ss Score
9.4
3' ss Seq
TGAACCCTGCTTTCTTACAGAGC
3' ss Score
8.53
Exon sequences
Seq C1 exon
ACTCCCCAACATTTAACCCGCAATTATGATAAACCCTGGCTGACAAACAGCAAATCAGCCACCCCTCTTAAATCATCCGACTCCTTTGACAGCCAAGGGTCGTCCAATGAG
Seq A exon
GTACGCTGCTTAAAAAAAAGAGAGTGAAAATCAGCATCTAATCTCCCGCCTCCTGCTGCTGACCTCTGTGTCTGATCTAATCTCTTCCTGTGTGGATCTGGGATCGGGTTCAGGCTCTATCTCTGGCTTTGCAGTGATGCATGGAAGTGCTCTGGCGGATGTGTTTGCTTAATTCTGATCTTTAAATCTCTCTCTCTCTCTCTTGAGAACATGCGGTGGTGGTGGTGGTGGTGGTGGTGGGATTTTGTCTTGGAAATCGGGGCCTTTTTAAACCGTCACTTCCTTTCTGATTCTTTCAGAGCTAACAGGACATTAATGCGTTTTCTGCCACTAAAGCTGCTTGTGAGATATTCCTCTAAACTCTCCCTGGCTTCATTGAATTCCCTGTACGAGCATGCTGTGGTTTGTCTGTGTTTGATGTGCATTTATTTTATCATGTTGACTTTTGGGAGTAACACATGAGGTTTTAGCCAACCCAAGCTCGTTGTGGAAACGTAGTCCCGCGGACGTTTCTGGAGACCGAGGAATACGTCCCAACGGGTACATACGGCTGCAGTTTTTGTTTTTGCGAATCCGCGAGAGGGCGCTGTTGTACGCTTTTTTGCACCTCAGACGCCTTTTGCGAGTGCGGTTCGCGCCCGCGCTGTTCTTGCGTGAACCCACCGGAGGCCGCTGTCAGACTGACTGGATGATTGATTGCGCGACCGGCCAATCGGCTGACCCGCCCTCCTCCTTCCCTGAACCCAACCAATTTTACAGATCGACCGCCCGCCCGCTCGCTTCCCTAAACCCGAGCGACAGTTTACAAAAGCCGTCCAAAAAAAGAAAAGCCCTGATTTTTTTTTCTACCGCGTTTTTGGATTTCACTGCGTTCTCACCCTGTTACGAAACTCGTTCACTTAATTTTTGGGATTCTGTTTTTGTCTTACCTGATTGCTGGAACCGCTCTTCCCCGAACTCGAAACCGGTCGCCGTGGTCGACTCCTCTCTGCATCTCGAGCCTGCCGACGTACACGGTGAGCTGAGTGGACAAACGGGTTGCAGCGGGGAAGCCCTCCACAAGGAGGTAAGCGGTTGGCCCGCCGGCCGGCCGGCAAGTGCGAAAGGGAACATCGTCACACCGCCCCGTAGCGTTCTCTTGAAATAAATTAATGCAGCCGTACATACCTCCTGGGACGTATTCCGCGGTCTCCAGAAACGTCCGTGGGACTACGTTTTCAGAATGAGCTTGGGTTGGTTTTAGCTGTGTGTGGCTGGAATACAGGAGTCACTCCTCAACCCACAGCTGTCCACTTCATGTTTTCAGACAGGATTTCTGTGTTCAGTTATTAGCCATTTTATCAATATTTATTTATTGTTTTTAAATATTTTCCAGGTGCTGTTTAAGAGGAAGAAACATTTCAACACTTTTAAACAAAATACGTTTTATAGTAGCTGATTTCTTTTGTCTTTACGTGATTCAGGGCGCACACGGTCATGGAAAACCTAGAAAATGTCATGGAATTTTGACATGCCATTTTCCAGGCCTGGAAAAGTTTTGGCAAAACAAAAAATCCCACAGGGCGAGGCAGTGGCGCAGTAGGTAGTGCTGTCGCCTCACAGCAAGAAGGTCGCTGGGTTACTGGTTCGAACATCGGCTCAGTTGGTGTTTCTGTGTGGAGTTTGCATGTTCTCCCTGCCTTCACATGGGTTTCCTCCGGGTGCTCCGGTTTCCCCCCACAGTCCAAACACATGCGGTACAGGTGAAATAGGTTGGCTAAATTGTCTGTAGTGTATGAGTGTGTGTGAATGTGTGTGTGGATGTTTCCCAGAGATGGGTTGCGGCTGGAAGAGCATCCGCTACGTAAAAACTTGCTGGATAAGTTGGTGGTTCATTCCGCTGTGACGACCCCGGATTAAATAAAGGGACTAAGCCGACAAGAAAATGAATGAATGAAAAAATCCCACAAAGATTTGGGAAAGTCATGGAAATTATAAGAGCAACAATGAATAAGTGCTGTAGGCAAGTTTCAGGTGTGTAAAGTGTAAGAAGCGTACAGTTAGTGGTATATCCAGAGAGGCAATTGCAGATTAAGAAGGAAAGTGGAGACTAAATAGTTCCAAAATAAATAGTAAAGAGTTTTTAGTGGTTTCTTGAAGACAGCGAGTGACTCTGCTGTTCTGATGCAGTTCGGGAGTTCATTCCACCAACTGGGCAGATTGAATGTGAGAGTTCGGGAAAGTGATTTCTTCCCTCTTTGGGATGGAACCACGAGGCGACGTTCATTCACAGAACGCAGTTTCTGGAGGACACATACATCTGCAGAAGTGAGAGCAGATTAGAAGGAGCAAAGCCAGAAGTCGCTTTGTAAGCAAACATCAGAGCTTTGAATTTGATGCGAGCAGCAACTGGCAGCCAGTGCAAACGGATGAGCAGCGGAGTGACATGTGCTCTTTTAGGTTCATTAAAGACCACTCGTGCTGCTGCATTCTGAAGCAGCTGAAGAGGTTTGATAGAGTTAGCTGGGAGCCCGGCTAGTAGTCCAGTGTGGAAGAGCTTGAACAAGGAGTTGAGCTGCATGTTCAGATAGGAACACATGTGCACTTACCGTCTTGCAGACTAACTTTGACCGCTCTTCGCATGCCTTTTTTAAACCCACAAGACTGTTTACTTTTACCCATAAGTGAAAGTGTGGTTTAGGAAACCATTTGGGATAGGCAGGTCACGATTTTGCCAAGTACATGTATGTTGATCCTGCAAGATCATTTTAGCTGGAAAATGTAATCCATACCTCTAAACCCAACCATAACATCCCCAAATCAGAGCGGTAACAATCATGTAAAGTGCATAACCCTAACCGTAAGCCCTAAACTGTATACTTAATTCTGATTGGCTGATTGGAATGTTGTTCCAGGATCAACATAGATATTAATCTAGTAATATTTCCTACTTGGTGAAATCAGGTTGGCCCTTAGAAACCTCTTCTCAGCCAGATATTAACATTTGTATTTCTGTAATGAAACCGTCTGTGATCTGCCTCATGGTCCTGTTCTAAATGTTTTGTTTCTGAACCCTGCTTTCTTACAG
Seq C2 exon
AGCACGCCGATTCAGGGCAGCAAGCTTCGTCTTCCAGGATATTTGTCAGGGAAAGGCTTTCAGTCGACAGAGGATGGAGCCCTGATCAATGCTGCGGTCATGAAGGCCAGAGGTCAAGCTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101858:ENSDART00000165987:58
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]