BtaINT0053073 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021237 | DST
Description
dystonin [Source:HGNC Symbol;Acc:HGNC:1090]
Coordinates
chr23:3681683-3685931:+
Coord C1 exon
chr23:3681683-3681882
Coord A exon
chr23:3681883-3685807
Coord C2 exon
chr23:3685808-3685931
Length
3925 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
TTTTCCCTGCTTAACCACAGGGG
3' ss Score
7.82
Exon sequences
Seq C1 exon
CTAAAGGAAGGACGAACATGGAACTGCGGGAGAAGTTCATCTTGGCGGATGGAGCCACTCAGGGCATGGCTGCCTTCCGGCCGCGGGGCCGGAGATCCAGGCCCTCATCCCGGGCGGCCTCGCCCAGTCGGTCCACGTCCGTGTCCGGTCAGGCCGGCCAGGCCGCCTCCCCGCAGGTCCCTGCCAGCAGCACGCCTAAG
Seq A exon
GTAGGACGCGTTTTCTTCTCCTCCACACTCCCCGTCTAGAGCAGCAGTCCCAGCCTCTGGGATCTAATGTCTGATGTTCTGTGGTGAAGCTGCTATAATAATAAATAGGAATAAAGTATGCAATTCATGTAACGCTCTTGAGTCATCCCCAGACCAATCCCTGGTGCCAGAAAAGGTTGGGGACTGCTGTGCTAGAGTCTGCTTTTCAGTGTTTGGGGTTCCTAGAATTTGCAGGACCAGCTTTCTCCAGATGTGTCCCTTATCACAATATGGAAGATGCAGGATTAAATATATGTGTGTGGATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTTTTTTTTTTGGTATGCCTTTGCCTTGTGGCCCATATAGAGACAATCTGTTTGGAGACTTTGATACCTTTTAGACTGCATTTTCTTTTTAAAGCTTCATTCATGTTTTTGGTGTGTATGATTTGCCATCAGACCTTTCCATTTGTTTTTAATGACGATCATTCTTACTGCAAAATGAGTAGCTGTGAATCTCTCTCTCCATGGCTTTGCTTTTTATCTGCCATCCTTCACGTTTGATTTGCCATTGTTCCATACAGATTCTCCATCCTTTAACACGCAATTATGGTAAACCCTGGTTGACAAACAGCAAGGTGTCAACTCCCTGTAAACCAGCCGAGTGCCCTGACTTCCCCGTGTCATCTCCAGAGGTATCGTAAGGCCCCAGATTCCAGCCTAACAGCTGCCTTTAACTATCACTTACTAGCCCTGCTGCACCTCCCCCTTGATAACTGCACTTTTGACAATACTGTGTCTTTTTAAACACTTCTTTGTAGTAAGTCTCAACCCAGCATTTCTAGGCAGACACGAGAGTAAGGGCTCAAACAGAAAAGACGGCTTGTAGCTCCTTAACCTTGCCACCACTGCGGGCTCTTGATCGCTTTTGCTTTTTGTTCTCTTGCTCATACTTCTGCTTTTCTCCCCTGGGAGAGTGAAATACAGGAGACTATACCCAGACCTGAGTCCAGTTTCTTTTCAAGCTGATGGTTTCCTTCTGCTTCTAGACATAATTTCAGCAAGAAATACTATAATCCTTTTTGGGAGAGAGTGAAAGGCAGTGTTATTTGCAAGAGAATCACTTAAAAGAATGTGGATTGAGTGTTCTCTCTGGGCAAGGTCCTTCTGACTGTCTGGTATGTTACGTCTGTCCAAGAACACTGGGTGGTTGGGACATAGCCTTTTAGTCATCAGTGCCGGAGGTCAGGGGCTAAGGTAGGCACAAAGTTATCTCTCTTTCTCAAAAGGTGTATGTCTTTATTAGACTTGATGATTTTTAGTCAGTGTGCTCTTTTTTAAATGACATGCTCTGTGGGGATAAGATATTTAGGTGATATAAGATTTGCCAAGATTAACTCCTATATCAGATCATTTATGTTCAACTGGAAGTCAACCATATGTCTTTTAAAGAAACTTCTCTGTAAAATGATAAACATAGGCACATATTTGACCAGAATCACAAGAATTGGGTGGGAGAGAATCTCTAAATAACTCTTCCTGAAACCAAGGAGGCATTTCATATTAAAGGCAAGGACTCTTGGATGCAAGTAACTTAGTACCACTCGAAAGCCTTTTATGCTTTTCCAAAACTCTTTCTTACGTATTATTTAACCCTCACACTCATAATGAGAGGCAGGCAGAGGAAATATCATTGCCCTCCTGAGACCGGAATGGTGTAAATGGAAATTGCTGATGGAGGTAGAATCGGGCACAAACCAGTCCTCATCCCCAGCCCCTCGTCCCTCTCCCTTCCCCCGAGTGAGCGATGTGGTTTAGTATCACATGTTCTGTCTCGAGGTGTCACTTCTGATGGATCTGTTGTGGCCAGAACTGAAAGCAGAGGAGGGAACCTTACGTGAGATGTTTGTTTTAAATATTTAGGGCTTATGAATGGATAAGAAAGCTGTGGTACATATACACAATGGAGTATTACTCAGCCATTAAAAAGAATACATTTGAATCAGTTCTAATGAGGTGGATGAAACTGGAGCCTATTATACAGAGTGAAGTAAGCCAGAAAGAAAAACACCAGTACAGTATACTAACGCATATATATGGAATTTAGAAAGATGGTAACAATAACCCTGTGTACGAGACAGCAAAAGAGACACTGATGTATAGATCAGTCTTATGGACTCTGTGGAAGAGGGAGAGGGTGGGGAGATTTGGGAGAATGGCATTGAAACATGTGTAATATCATGTATGAAACAAGTCGCCAGTCCAGGTTCGATGCACGATACTGGATGCTTGGGGCTGGTGCACTGGGATGACCCAGAGGGAGGGTATGGGGAGGGAGGAGGGAGGAGGGTTCAGGATGGGGAACACAGGTATACCTGTGGCGGATTCATTTCGCTATTTGGCAAAACTAATACAATATTGTAAAGTTTAAAAATAAAATAAAATCAAAAATAAATAAATAAATAAATAAATATTTAGGGCTGTGCTACTCCATTAGTTCAAGTTTTTAAAAAATGGAAACCACCCCCCCACCCAAATTAAAGTCTTTAGGTAATAGAAAACTAGGTATGATTTCAAGTAGCCTCATGAGACAAAACAACAGTATCCTTCCGTGGAGGGGTCTTTCAGAGGACTGAGTAGCTTTGTGATCATAAAATCAAGCGCGTCAAGGCACCTGACGAGTGCTTTTGGTGTTCCGGGGGCAGGAACTGTCACCTCGCATAATATATTTCATCACCTGCGAGTCGTCAGTCTCTCTTGCGTTGCTGAGATTCTCAGTTAGGGATTTAGCTGAAGCAGAGCTGTCAGACTTCATTTGGGGAAGTTACTGCCCTCCTCAAGCCCTCCTCTTTCATGACTGTGAAAAAGTGATTAGGTAAGTGTGAGGATTGGTTGTGGTTAGATGTGTGATAATATTTTGAACACTCAAGTAATCTATATGAATTCTATTTACATTCTATACTTAAATGTATAGAGAGTATGTAAATGAATTATGAATATCACTAATATTAACAAATTGCAAGTCTGATGTATCAGGAGGTCTTACATGTGCTTTATTAAGCATTTAAAAGTATTTGATAAAGGAAAATTAATTTTAAAAAGCACATATAATTATATAGATTTATTTCCTCCAAACAGCTCCCTGACTGTGAGCTCATTGAGGGATGTGATATCCTTATACTTCTCAGGAGATTTGTTTTTTCTTTTTTTTAACTTTGGAAGAATTTTCAAAATGTTGTCGTGATGAAGAAAAAGGGCAGTGATTTTAGACTTATAATAAAAATTTCATAGCTGTGACTGCTTGAACGCTTGTAAGAATTTTAAGAGAATCATCCCAAAATGGTGTAAGGTATCTTGTGTGTGAGGACCATAGAAAGTGACAGGGCCAAGGGATAAAAGTGACGTCTTACAGATTAATAAAGTGTCACTTTTGGGGGCCATTTTGTTTGTTTAAATGATGGCTGTCTAAGCATTTCTTATTTTCTTTCTGTTCTGTTTATTTCCGTCTTGGTCCCTAAAAGCCTTGCAAGCAGCAGATAATCCAAACACAATTTTTCAGAGCCCCATCTTCTCTCTGTACCATGCAATCACCATCCTCTTTTTTTGGCTGAACTCTGAACTCTGTGATATTCACTGACTGTCTGAGAGATACTAACATACTCACAGTTTGTTGCCTCTATTTTCATATCTTCTCTCCGACATGGACTCATCTCCTTTAGAGGGTTCCCTCTGAATGCAGGGAGAGAACAAGAAGTTCGTAGGTGGGAGCCCAGTGCCTTGTTAACCGGTAGGCTGTCCCCTCCACCTCTCAAGTGTCAGCGGAGGGTTCCCACAGCCTGCGAAGCGGTGTCGGTGGAGGATCATGGGACAAACGCAGTGTCTGAAATGTCTTTTCCCTGCTTAACCACAG
Seq C2 exon
GGGACGCCAATACAGGGAAGCAAGCTCCGACTTCCGGGATACTTGTCAGGGAAAGGCTTCCACTCCGGGGAGGACAGTGGCTTGATCACCACCGCAGCTGCCAGAGTGCGGACCCAGTTTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021237:ENSBTAT00000061451:98
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]