GgaINT0079363 @ galGal3
Intron Retention
Gene
ENSGALG00000016289 | DST
Description
NA
Coordinates
chr3:89931104-89934552:+
Coord C1 exon
chr3:89931104-89931303
Coord A exon
chr3:89931304-89934428
Coord C2 exon
chr3:89934429-89934552
Length
3125 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TGTTCATTCTTTTTTAATAGGGA
3' ss Score
9.44
Exon sequences
Seq C1 exon
CTAAAGGGAGGACAAATGTAGAGCTGCGTGAGAAGTTCATCTTGGCAGATGGTGCCAGTCAGAGCATGGCAGCTTTCAGACCAAGAGGCCGTAGATCACGACCCTCTTCAAGGGGTGCTTCTCCAAACCGATCTACTTCTCTGTCAAGTCAGGCTGGCCAGGCAGCTGCCCCACAAGCAGTTGCTACGAGTACACCAAAG
Seq A exon
GTAAGGAAGAACGTACAAAGCAACATTGTGTAACAAACGGAATGTAGGTTTTTTTCTTGCTTCAACAAAATTGGAATGTTCTCTAGATGACAGGGAAGAAGCACCTCAGTCTTATTTCATATTCTGGGAGGAAATCAGAAGTATTTTCAGTGTATTTCCTCTACTGTTTGTTAGCAACACAGGAATAGAAGATTTTCTTATATTTAAGGTGCTAACTGATGATTTGGGAATAAACTCTGAAGGAGCAAAAAAACTCTCCAATTCATATTAGAAATAAGCTCTGCCATCTCTTTGTTTCAGAACATTTGTCATCAACTCTTTCTACTTAGTTTGTATTTTTACTATGAGATTTGATCTCCCTGTGTAAGCCTGGGTATCCTTCTCCATGACATTGTTTGCCATCTGCTGTCCTTCATATTTTGATTTACCGTTGTTTCGTACAGACACCACATCATTTAACACGCAACTATGGTAAACCATGGTTGACAAACAGCAAAACGTCAACTCCTTCTAAGCCACCAGAATCCTCAGACTATCAAGGGTCATCTGGAGAGGTACAGTAAGGATAGAGATTCTAGTCTAATAGTCTTCCTTCACTAAAACCGTCACTTCACTAACAACCACTAGAGTTTCAGTGCTTCAGTGCTGCAACATCCCTTACATATTAATGCATTGACTTTATTTTAGACCTTTGCAACTTATTTGTTCATTGCCTGTTTTTTCCCCAAGACTTCTTTTTCTATTTGTTACTTTTAAAAAACTGAAAACTCAGATTAATTAATTTTTATCTCCCATGAAAAGCCACTAAATAAAGAGATACCCAGTCTCTGTAAACGAGATTGCACAAAATACTCATGGTGATATAGAAATCTTCCCAACAGCTGAAAGAGTAGTCTAAGGGGGTAATGACCAGTCATTCCTCTAATAAGATCTATTTGATGACTTACAGGAAATGAGCTTTGGTCTTTTGTCCAGACCATGACTTAAATAAAAGCTGCCAGTATAGCAACTAGGGTTGTGCTGGTAATTGAGCTGAATGACCCAAAATTTGAACGGGCTTGGAGCCAAAGTGTCTTCTCTAATGTCACTGCAGGCAGTGAAAAGGTTGCAGCTGGACCAGATGCAAACTGACTTTTTACTTGTAGGAATTACTCTTGCCCTAGTTTGGATAGAGGGCTCAGTGTGGAGAAGCTTATACTACCATCACCTTTTTTTGTATCTGCTTTTCACAAGTCTGCACTTTGATGTCTATTGCTATTCATTTGATACCTTCCAGCACTAAATTTACGTGACCTCTGTGTGGCTTTGCTCAAAGATGCAAAAGAAATTTTCACTCCCTCTTTCTTGTGCAAGTGGGCACATTATTTGTGCACACTGCAAGCATATGTATGTATACATCACTTCAAGCACACAAGGCAAGACTGTTGCTATGAATGATTAACAGCAGCACAACATAGAATCAGTTGTCTGTTTCTAATCTATTGTATTTTCATCTCTTAGCTGGTAAATAATTGTAAGATTAATTGATGGTACTTTCCAGATTCAAGAAATATGCATGACATGAAAGCAAATGGCATTGATTTCAAATGGGGGCACTGTATTTCTCACCTGCTCTTACAACTGCCAGTAGTTTAACTGAGTTTCTTTTATGTAAAACACCATGGATTAAGATTACAAATTGAATGATTGGGGTTGGGGTAGATTGTAGAGAATTTCTGAGATTCTGCTGCATTTTCTGCCCAAGAGAATAGTTAGTATTGTATGTGTAGACTGGCAATGGGTGTAGGGCTAAAATGAAGAACAAGTTTGATCTCTTTTTCTCCTTGTCCTGGTTATTCTATCCCAAGGCCTTCACCAAAATACAGCAGATCCAGCAAGGTGATGACAAGATTTCCCTTTCTGTTAATCATCCCAAGCAATTCCTGTAGAGCAGAGGTTTCTAAGATGTGGCTGGCTGGACAATCTTAGCCTGCTAACCATTCATACTTGGCTTTAGGGAGAGTTAATACTGTGACAATCCATGTCAGAGCAAGCACATTGTCTGCTCTGTAGCATCAGTGTGCTCTTTCTTTCAGCTCTGCCAGAAGTGGTCCTGGCTGGCAGAGGGCCAGGAGCAGCAGCCAGGCAGCCCCTGCTGGGCCCCTGCTCAGTGCTTAGCTCCAGGCAGCTCGCAGCTCACTCTGTGGACTGTGGTTTTCAGTACCCAATTCTACCCCACCACTGTATGGATCAAAGGCCTGGAACGTGGGTCCTGGGGTCTGGGCCACTTAAAGGGCCATATTCATAAATGCAGTATTTCTTCTTTTAGGATATTTACTTAATATTTTTCTGTTGACTAAATTAATGGGAATACTGTGGTTTTCTTCTTATTTGCCTAAAACTCCTATCTAGTATGTTACATGTGTTTTGGGATTTGAGAAATGAGGATTTCATTCTTGTGGCACCAAAAGAAACCTTCCTGTTTGGGGCTGATTATAAATCAAGGCTTGTTTAATCTCAGAAATGAGAAAGGCAGGGTAAAGATATGGAGCAGAGATGTTTCAGGCAATGTATTGACAGCAAGGACTTCTTGAAGTAGTCGTGTTTTTTCTTCTGCATTGTGGCAAAAGATTTTGAAATTAGGTAGTTGTGTTTTATAAATACCATCGAGTATTTATAAAATGAAAACAAATGCACTACAGCAACAATTAGAATGGTGGAAAGTCAAGCTATGCAGACATAAATCTTCAGCTACTTCATTAATTGAAGTCATGTACCATCAACTAATCCTATGTTTTTGACTAATGGTAAGAAAATAGCATTTTTCTTCCGATATATGCACTGAAGTACACATAATGGCTTGAATTTTAGTGTCAAGCAGCCTATCAAACTGTTTCTTGATTTGCTTTTAGACTATTTCAAGAATTAACTGCTAAGGGAATGTTCAAAGCTTCACATCATCAAAAATGTCCATACTGACTGAAACCAGTATTTCAGATTCACAGTGAATGTTGCTAAGATGATCATATTCCAAAATCATATTCCAAGCTATGTATCACCTAATACTTGGCCACATCTTCAGTAGCAAAAATAGAAACAACCTATTTATTTATTTATTTATTTGTTTGTTCATTCTTTTTTAATAG
Seq C2 exon
GGAACACCTATTCAAGGAAGTAAACTCAGACTGCCAGGATATCTATCGGGGAAGGGTTTCCACTCTGGAGAAGACAGCGGCATCTTGTCCACAGCAGCTACCAGAGTCAGAGCTCAGTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016289:ENSGALT00000026264:100
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.705 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]