RnoINT0051574 @ rn6
Intron Retention
Gene
ENSRNOG00000012207 | Dst
Description
dystonin [Source:RGD Symbol;Acc:1306566]
Coordinates
chr9:37904268-37907258:-
Coord C1 exon
chr9:37907148-37907258
Coord A exon
chr9:37904392-37907147
Coord C2 exon
chr9:37904268-37904391
Length
2756 bp
Sequences
Splice sites
5' ss Seq
GAGGTATTG
5' ss Score
7.44
3' ss Seq
CCTACGCCGGTCACACACAGGGA
3' ss Score
3.11
Exon sequences
Seq C1 exon
ATTCTGCACCCTTTAACACGCAATTATGGTAAACCATGGTTGGCAAACAGCAAAATGTCAACTCCTTGTAAAGCAGCAGAATGCCCAGACTTTCCCGTGTCATCTGCCGAG
Seq A exon
GTATTGTAAGGCCCCCAGACCGCAGGCTTAACAGCCTTCTCTGGCTGACACTCACCTACTAACACCGCCTCACCGATGTCCTTGATGTGTGCACCTCTGATAATACTACATCTTCCTCTTAACTTCCTGCAAATCAGTTCTCAGGGGGCCTGAGAGTAAGGTTATCAGGAAAGACGGTGGCAGCCTAAGGTGTCCACACCGTGAGGCTATATCCGCTCCTTGGCTTTTGTTCTCCGTATGTATGGCCTACGAGAGAATGCCCCTTCTAATAGACATAACTCCAGCATGAAACAACACATTCCCTTAGATGAGAACCGGAAACAATGTCATTTGCAAGAGAATTAACTTAAATGATTTTAGCACGTGTCCACGTTGCATTGCCCCTCTGAATGTCTGTGGCATTCCCTTCTTCGTCATGCTGGCCCGGTGTGACTTGGTACTCAGAGGCATCAGAGTATCGGATAGCGGTGGGAATGTAGAAAGCTGACTGTCATTTTCCAAAGGTGTCCGTATTATATCTTAGTAACTAATATTATCCGAGCATTCTGTAACATCTCAAAATGACAGATCCAGAGAGAAGATATTTAGGGAACATAACATTTGCCAAGATTCACTCACATATCAGGTTGTTCACATTTAGTTAAAAATCAACCCATCTATTTCTCTAAAGAAACTGTGTGAATTGATCGGGGTAGGCACCATTTCAGGTGCTTGGTCCAAGCCACAGTGACAGGGGAGGAGTGCCTAACCATCCTTTCTTGGAAATGAGGAGTTATTTTTGGCCTAATGGTTTAGGAAGAAAGCCAGGGCCCTTGTGTAAGAGAAGTACAGTGCTTTTTAAAAAACCGTGATGGTTTTCATAACTGTTTCCCAGTTAATTAATCCTCACATTAGTTACAATAGGTGGGCAGAGGAGAGTCCCCTGCCTTCTCGGTACCAGTCCCTGAGGGGTCCAGGTGAGACGGTTGAGACAAACACAGACTTCCTTCAAATGCCCCTTCCCTCCTCTTCCTTCCCCTGGGCCCCAGACTCCGACTTGTCTCCCACTTGAAGGAGCAATCAAAGACCGCACCAAGAAATGTCAATGAGTTGTTGTGGCTCCACTATATAAAAGCCCTTGCCCTCAAACCAATCCTTGTTTTAAATATAAATATTTGGGGGTAAATTTCTATGTTCACCCTTTTTTTTTAAGTAGCAGCTGCCCCAGTTAAAGTAGGGACTGGGGAAACGGCTCGGTTGGTAAATTACCCACTGCACAGAGGTGAGACCCGAGTCCGCATCCCCAGAACCCACCTAAAAACAAGGTACTCAGGGTGGAGAATGGCAGAGAGAGAGACAGGCTAGTGAATCAGTGAGACACCCCTCAAAAGCAAAGCCGAGGACAGTAAAGGGAGATGCCAGATGTGCCCGAGGCCGCAGCATGGGCTCCCGTGTGCACATGCCCGTGGACAAAGTCCTAAGTCCTTTAGCTGTTCAATTTTAAAGAATGGCCTCACAGTATCTCAAGAACAGTGGTGTGCACACGGGAAAGCCCAAGCACTCAAGGCACAGTGAGGCGGGTGGTCTTGGCCTTTATACGACCCCGGGGGACAGATTCATAGTTGATGCTTGCTCCCTTGTGGATGGCGAGGTGGGTGTACCGGTTAGCAGCCGGCTGATGTATATGAAAGCAGGGTGAGAATGTTTTCCTATAGAAATCACGCATAAAATACCCTGGAGCTGAGTGTGAATGAAACATGCCCATTATTCCAGCACTCAGAGTGTGAAAGGGAGAACGGTCACTGTTATGGGCCAGCCTCAGCTACAGAATGAGTTTAAGGCCAACCTGGGCTACATGTCTGTTAAAAAAAATCACCTGCACTTAGGTTTGTGTATAGAACACACATGTAGATAAAGGGTAGGAATCCTAAAACCAAGAAATACCAAGTCAGAGGCTAACATCAATACCAAACACCTTGTATATGCTTCGTTAGTAATTTCCAGCTCTAATGAGAAAGGGCTCTGAACACAGTCATCATTTTTATAGATTTGTTTTCTCCATGGCTCCTTGGCTATGTGCTCACTGGCACTAGAGACCCCTGATATTCGAGTTCTGTTTTTAACTTCAGGAATTTCTAAAATGTCATGATGTAGAAACTTGGGTCCAGACCTATCACATTGTCTTACAATTGCTCCATACATTTCCCTCAGGTGACTCTTAAAAGTCTTCAAGAAATGTCTCCAAAGTATTGCCGTACAGTGTGAAGTTGGACGGTCACACTTCCTGTTTGAGGGTTTTTTTTGTTGTTGTTGTTTTTGTTTTTTTTGGTTTTTTTTTTTTCTACTCTCATCTCTCAGTTTCTCTTTAATGTCTGCCTCATTTTCCTGAGAAAATTGAAGGCAGCGGAACGGTCAAGCATAATATTCAGCTCCCCGTCCCCGCCCCTGCTCAGCCCCGCCCCGGCGACACCTCCAACCCTGTAACAATGATGGTCTGAGATGTGCTAACAGCCCACGGTTTGATTGACCTTGTTTTCCTTCCCCGTGACTTCTGTGTTTTCTCTCCCATCATGAAGCCGTTTTCTTTAGACGGTTTCCTTTATCCGAGTAAGAATTTAAAAAATAAATAATTAAAAAGAGGAGGGCAGGTGGGAGCCACACCCCTCGCTGATCTTCAGAGGGCGTGTCTAGATGTCCAACTGTGAGGGAAGTGTGTCAGTGGGATATCATGCAGCACGGTCAAACTCTTATGCGGTCCCTACGCCGGTCACACACAG
Seq C2 exon
GGAACGCCAATCCAGGGAAGCAAGCTGCGGCTGCCAGGGTACTTGTCAGGGAAAGGTTTCCACTCCGGGGAGGACAACGCCTTGATAACGACCGCAGCCTCCAGAGTCCGAACGCAGTTTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012207:ENSRNOT00000044452:98
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.605 A=NA C2=0.976
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]