BtaEX0012097 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021237 | DST
Description
dystonin [Source:HGNC Symbol;Acc:HGNC:1090]
Coordinates
chr23:3681683-3685931:+
Coord C1 exon
chr23:3681683-3681882
Coord A exon
chr23:3682482-3682592
Coord C2 exon
chr23:3685808-3685931
Length
111 bp
Sequences
Splice sites
3' ss Seq
TTTGCCATTGTTCCATACAGATT
3' ss Score
8.05
5' ss Seq
GAGGTATCG
5' ss Score
8.1
Exon sequences
Seq C1 exon
CTAAAGGAAGGACGAACATGGAACTGCGGGAGAAGTTCATCTTGGCGGATGGAGCCACTCAGGGCATGGCTGCCTTCCGGCCGCGGGGCCGGAGATCCAGGCCCTCATCCCGGGCGGCCTCGCCCAGTCGGTCCACGTCCGTGTCCGGTCAGGCCGGCCAGGCCGCCTCCCCGCAGGTCCCTGCCAGCAGCACGCCTAAG
Seq A exon
ATTCTCCATCCTTTAACACGCAATTATGGTAAACCCTGGTTGACAAACAGCAAGGTGTCAACTCCCTGTAAACCAGCCGAGTGCCCTGACTTCCCCGTGTCATCTCCAGAG
Seq C2 exon
GGGACGCCAATACAGGGAAGCAAGCTCCGACTTCCGGGATACTTGTCAGGGAAAGGCTTCCACTCCGGGGAGGACAGTGGCTTGATCACCACCGCAGCTGCCAGAGTGCGGACCCAGTTTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021237_CASSETTE6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=0.946 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000061451fB2284
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCATCTTGGCGGATGGAGC
R:
GTGGTGATCAAGCCACTGTCC
Band lengths:
258-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development