GgaEX0024007 @ galGal3
Exon Skipping
Gene
ENSGALG00000016289 | DST
Description
NA
Coordinates
chr3:89931104-89934552:+
Coord C1 exon
chr3:89931104-89931303
Coord A exon
chr3:89931747-89931857
Coord C2 exon
chr3:89934429-89934552
Length
111 bp
Sequences
Splice sites
3' ss Seq
TTTACCGTTGTTTCGTACAGACA
3' ss Score
7.38
5' ss Seq
GAGGTACAG
5' ss Score
6.62
Exon sequences
Seq C1 exon
CTAAAGGGAGGACAAATGTAGAGCTGCGTGAGAAGTTCATCTTGGCAGATGGTGCCAGTCAGAGCATGGCAGCTTTCAGACCAAGAGGCCGTAGATCACGACCCTCTTCAAGGGGTGCTTCTCCAAACCGATCTACTTCTCTGTCAAGTCAGGCTGGCCAGGCAGCTGCCCCACAAGCAGTTGCTACGAGTACACCAAAG
Seq A exon
ACACCACATCATTTAACACGCAACTATGGTAAACCATGGTTGACAAACAGCAAAACGTCAACTCCTTCTAAGCCACCAGAATCCTCAGACTATCAAGGGTCATCTGGAGAG
Seq C2 exon
GGAACACCTATTCAAGGAAGTAAACTCAGACTGCCAGGATATCTATCGGGGAAGGGTTTCCACTCTGGAGAAGACAGCGGCATCTTGTCCACAGCAGCTACCAGAGTCAGAGCTCAGTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016289_CASSETTE4
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.705 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCATGGCAGCTTTCAGAC
R:
CTGGTAGCTGCTGTGGACAAG
Band lengths:
244-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]