RnoEX0030038 @ rn6
Exon Skipping
Gene
ENSRNOG00000012207 | Dst
Description
dystonin [Source:RGD Symbol;Acc:1306566]
Coordinates
chr9:37904268-37907837:-
Coord C1 exon
chr9:37907635-37907837
Coord A exon
chr9:37907148-37907258
Coord C2 exon
chr9:37904268-37904391
Length
111 bp
Sequences
Splice sites
3' ss Seq
TGTACCGTTGTTCCACGCAGATT
3' ss Score
8.73
5' ss Seq
GAGGTATTG
5' ss Score
7.44
Exon sequences
Seq C1 exon
CCAAAGGAAGGACCAACATGGAGCTGCGGGAGAAGTTCATCTTAGCGGACGGGGCCAGCCAGGGTATGGCTGCCTTCCGACCACGAGGCCGCCGATCTCGGCCTTCGTCGAGAGGAGCTTCCCCCAACAGATCCACTTCCGCATCCAGTCACGCCTGCCAGGCAGCCTCCCCACAGGTGCCTGCTGCCGCCAGCACACCCAAG
Seq A exon
ATTCTGCACCCTTTAACACGCAATTATGGTAAACCATGGTTGGCAAACAGCAAAATGTCAACTCCTTGTAAAGCAGCAGAATGCCCAGACTTTCCCGTGTCATCTGCCGAG
Seq C2 exon
GGAACGCCAATCCAGGGAAGCAAGCTGCGGCTGCCAGGGTACTTGTCAGGGAAAGGTTTCCACTCCGGGGAGGACAACGCCTTGATAACGACCGCAGCCTCCAGAGTCCGAACGCAGTTTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012207_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.676 A=0.605 C2=0.976
Domain overlap (PFAM):
C1:
PF0218712=GAS2=PD(2.5=2.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGGACCAACATGGAGCTG
R:
TTCCCTGACAAGTACCCTGGC
Band lengths:
251-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]