DreEX0005011 @ danRer10
Exon Skipping
Gene
ENSDARG00000012600 | HELZ2 (2 of 3)
Description
helicase with zinc finger 2, transcriptional coactivator [Source:HGNC Symbol;Acc:HGNC:30021]
Coordinates
chr2:42117599-42124181:-
Coord C1 exon
chr2:42124074-42124181
Coord A exon
chr2:42123430-42123953
Coord C2 exon
chr2:42117599-42118249
Length
524 bp
Sequences
Splice sites
3' ss Seq
GTGTGTATGTGCATGTCTAGAGA
3' ss Score
4.23
5' ss Seq
CAGGTATAG
5' ss Score
8.73
Exon sequences
Seq C1 exon
ATCTCTGAGCATGTAGATGATGTGCGTGTTACACACGATGAGAATCTCAGTATGGACTGTTTACAAGAGGACAATGAAATCAGATGGAAATTCACAATCACCACTGAG
Seq A exon
AGATCCTTGGCTCACGTAGCTCTACTAAAAGTGGAAAATGGTGCTGTTTTCTCTTTGAGTGATAGTTTAAGAAACACCATCCCCCCAATCACACACATAGCAGGCCACGAGCTTCGTTCCTCTCAGTCCACCTACCAGCTGAGTGTGTCTTTCCTGTCTTTCCACCCTGGTGTGTACGAACAATGGCTGGTGTTTGATTTTGACATGCGACCAGTTCTGCTCAGGAAACTGAAGGTGAGGGTTGGACAGCAGTTCCTTGTCCAGCCTGAAGAGGCAGAAGAGAGTGAATGTGCTGAGATTCTTTCCAATGAGCGCTGGAACAGGGGAAACAGGGTTATCGTGCCCTTCTTCGCCAGAAAGGAGGAGGACGAGCAGTTGCTCAGTAAATACAAACCACCTCAACTGAACCTGCAGTTCAATCCACATGCAGATCATAGTTTGCCACTTCATCGGGAAAACTACAGAGAGAGGGCTCACCACTTCCTGTTCAGGGAGGAAATTGCAGAGGAGGAGCTCATTAGCAG
Seq C2 exon
GTTAAATGTTTGTGGGACTGTGTCTCTCTCTAACCATTTGAGTGATGCCATGTCACTGTTTTACGCTGCTCCAGGAAAGCTCTTTGCCAATCTAAAGGTGTCCTGCTCACTCACACCGGACTCTCCTGAAGGGGTAGTACTTAAACGAGGGGTGCAGATGGCTCTGGTGAACTGCAAATCAACAAAGGCTAGCATGTCAGCAGAGCACAGAAACCATGTGTATGAAGCATTTGTGATGAAAGAGACTGTTGGTGAGGGTCACCTTAGTCTCGAGCTCTCTACACAGTGTGTGTCTGAACTAGAGCTGCGAAAAGAAACCACATGTGAAATGGAGGTTCAGTTTCAGTTGAATAGACTGTCATTCTGTCAGATACACCAAGCTATCGACCGCCTACCAGACTTGCACAATGTTCTGCCTGACTTCAGCAACTGTTGTGTCCCCGTGAATTTAACCAAACAGTCCCAATTGAACAACAAACAGCAAATTGCACTAAACTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012600-'2-3,'2-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.011 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF130861=AAA_11=PU(52.5=28.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGTAGATGATGTGCGTGT
R:
CCCTCACCAACAGTCTCTTTCA
Band lengths:
358-882
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]