MmuEX6107655 @ mm10
Exon Skipping
Gene
ENSMUSG00000027580 | Helz2
Description
helicase with zinc finger 2, transcriptional coactivator [Source:MGI Symbol;Acc:MGI:2385169]
Coordinates
chr2:181237356-181239411:-
Coord C1 exon
chr2:181239307-181239411
Coord A exon
chr2:181238476-181238613
Coord C2 exon
chr2:181237356-181237503
Length
138 bp
Sequences
Splice sites
3' ss Seq
GCCTATGTCTCCTTCTCCAGGAT
3' ss Score
11.06
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
ATGGCTGAGACCATCCGTGGAGTGTCTGTCACTTGCCACCCACCACCGGTGCATCAGGCCCAGGAGAAGATCCAGCACCAGTGGGTGTTCACCATCCACTCTGAG
Seq A exon
GATCCCTTGCTACATGTGGCCCTACTCAATCAAGAGCCTGGAGCAGCTTTCTCACTGGTGGCCCCCAGTCTCCCACCACACCAGCTCTATGCACAGGGAAAGCACTTCTGTGTACAAAGCTCCCCAGCCCAATACAAG
Seq C2 exon
GCAGAAGACCCGAGGGCACAAAGCACATCCCACCACTGCTCATCTATGGCCCCTTTGGCACCGGCAAGACGTACACATTGGCCATGGCCGCACTTGAGGTTGTCCAGCAGCCCCACACCAAGGTGCTCATCTGCACACACACCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027580_MULTIEX2-1/3=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.104 C2=0.023
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF130861=AAA_11=PU(53.0=28.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCGTGGAGTGTCTGTCAC
R:
CTGTTGGTGTGTGTGCAGATG
Band lengths:
242-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types