RnoEX6020745 @ rn6
Exon Skipping
Gene
ENSRNOG00000013267 | Helz2
Description
helicase with zinc finger 2 [Source:RGD Symbol;Acc:1306056]
Coordinates
chr3:176739814-176741743:-
Coord C1 exon
chr3:176741639-176741743
Coord A exon
chr3:176740555-176741072
Coord C2 exon
chr3:176739814-176740455
Length
518 bp
Sequences
Splice sites
3' ss Seq
TGGCCTATTTCCCCCTCCAGGAT
3' ss Score
10.28
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
ATGGCTGAGACCGTCCATGGAGTGTCTGTCACTTGCCAACAGCCACTGGTGCATCAGGCCCAGGAGAAGATCCAGCACAAGTGGGTGTTCACCATCCACTCTGAG
Seq A exon
GATCCCTTGCTACACGTGGCCCTACTCAAGCAAGAGCCTGGAGCAGCCTTCTCACTGGTGGCCCCCCATCTCCCACCACACCAGCTCTATGCACAGGGAAAGCACTTCTGTGTGCCCAACTCCCCAGCCCAATTCCAGGTAGGGGTGCTTGTGCAGGCTGCCTCCTTTGGCAGCTTCGAGCAATGGGTCGTCTTTGACTTCGGTCGCAGGCCAGTGCTTCTCCAAAAGCTGAAGTTGCAGCTAGGCCAGACACACAGCCTGGGGCTCAATGGGAAGCCAGCACCAAGCCACCCCCAGGAGCGGGAATGCTGGCACACAGGCAACCGCCATGTGGTGCTTGAGGTAGATTGGACACCTGAGCAGGAAGCCCTGATGGCCAAGTACAAGTTACCCTCCCTGGCCCTGGAGTTCAGTCACAATGTTGTGGTCTGGGGGCCCATCTCTCGTACGAACTACCGACAGAGGATGCACAAATTTCTCTATGAAGAGGAAGCAGCCCAGCAGCAGCTGGTAGCCAA
Seq C2 exon
GCTGGCTATGAAGGGCCAGGTGTCCCTGAAGACAGCACTGGAGACACCAGCACTGGGCATGCTCTTTGCACCACCAGGGGCCCTCTATGCCGAGGTCCCCTTCCCCTCCTCTCTGTTGCCAGACACTGACCAGGGCTTCCTGATGAGCCGAGCAGTCAGCACAGCCCTTGTGGCTCCTGCGCCTGCGCCGGACAGTAAAGTATACCAAGTGCGGCTGGAGGCACGGGCCAGTTCAGAGCATGCACTGTGGCTGCTGTTACCAGCACGATGCTGTATGGCTTTGGGGCTGCAGGCACAAGACAGCCCTGTCTTGGAGGTGCAGTTCCAGATCGACCCCCTGATCTTCCGGTTCTGGCATCGGGCAGTTGATGCACTGCCTGAGGTGTGCCTGGTTGTTCCTGACCTGCCCGCCTGCACCCTGCCCCACCCCTGGCCCACCCCGCCCTCATTCCGTGGCAATCACAAACAGAAGCTGGCTGTGGGGCTCATCGCGGGCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013267-'5-5,'5-3,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.092 C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF130861=AAA_11=PU(52.5=28.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACCGTCCATGGAGTGTCT
R:
CCACAGTGCATGCTCTGAACT
Band lengths:
349-867
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]