DreEX0037302 @ danRer10
Exon Skipping
Gene
ENSDARG00000016527 | helz2
Description
helicase with zinc finger 2, transcriptional coactivator [Source:ZFIN;Acc:ZDB-GENE-120920-1]
Coordinates
chr6:58584619-58588133:+
Coord C1 exon
chr6:58584619-58584729
Coord A exon
chr6:58586338-58586464
Coord C2 exon
chr6:58587752-58588133
Length
127 bp
Sequences
Splice sites
3' ss Seq
ATTTACTTGAATGCCTCCAGGAG
3' ss Score
5.94
5' ss Seq
CTGGTGAAG
5' ss Score
2.39
Exon sequences
Seq C1 exon
ATGACTGACACCATTCCTGATGTGTTCATCACCTGTGACCGAGATTTAGATGCTGTCTATGTAAGGAAAAGGGGAATACAGTGTACATGGAATTTTACCATCATATCTAAG
Seq A exon
GAGCCTCTTGAAGTTATTGCTTTACTCAGGCGGGAACAGGGGGCAAAATTCAGCCTCAGCAAAAAACCAGATGAGGAACGGTCGTATTCCACGAGCGCTTGGTTTGAAAAGAGGACAGAGCAAACTG
Seq C2 exon
GGCATGAAATCCCAGTGTCATTCAGATCTGACCAGCCTGGCCTGTATGAGCAGTGGGTAGTGTTTGACTTCAATACGAGACCTGTACTTCGACAAAAACTAAAGGTCAGAGTTGGAGAGGATGATTGTCAGGCAGCTCCAGCACCGGAGGCACTATTAGAAAACCCAGAAGCTGCCTGCAATCTTGAGCCTTGGAATGAGGAAAGCATGACAATCATTCCTTTTGTTGAAACAGAAAAAGCACAGAGAGACCTACTAAACAGATACCAACTCATCATGATGAACCAGCAGATGAACGGTTTGATTAACCGTGAGAATTATAAATGGAGCATGCACAATTTTTTATACCAGGAGGAGAAGGTAGTCGGTGAACTGCTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016527-'4-5,'4-3,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.233 C2=0.068
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTTCATCACCTGTGACCG
R:
TCTAATAGTGCCTCCGGTGCT
Band lengths:
251-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]