GgaEX0008717 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr20:9714511-9716448:+
Coord C1 exon
chr20:9714511-9714618
Coord A exon
chr20:9714983-9715506
Coord C2 exon
chr20:9715816-9716448
Length
524 bp
Sequences
Splice sites
3' ss Seq
CCTCCTATCTCCCCTGGCAGAAG
3' ss Score
9.07
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
ATATCTGAGTATGTCGAGGGCATTACGGTGGTGTGCCAGGAGCCCCTGGATGTGCACTCGGAGGACAGGCAGCTGAAGTACCGGTGGAAGTTCAAGGTTTACTCCCAG
Seq A exon
AAGCCCCTGCAGCACGTGGCGCTGCTGAAGCGAGAACCCGGAGCCAACTTCTACCTGTCGGGAAATGGACTGGCGAAGGGCCTGCAGTACCTCCGGGGCGAGCACGTGGCCATGCTGCCGTCCGACCCACCCGCGGCGCAGGTGGAGGTCTCCTTGGAGTGCTGCACGCTGGGCGTCTTCGAGCAGTGGGTGGTGTTTGATTTTGGCAGCCGCCCCGTCCTCATGAAGAAACTGAAGGTGAGGGTGGGCCGGCGGGAGGCCGCCCAGCACGTCCCTGCTGGCAAGAGGAGTGACCGCAACATCAACTTTGTGCGGTGGAATCGAGGCAATCGCATCATCGTTCCCAGCGTGGTGAGGACCAGTGAAGACATGGATCTGTTGGCCAAGTACAAGCCTGTTGCTCTCTCCCTGGACTCCCAGCGTGAGAGCAGCGCAAACGCTGTCATCACCCGCCTCAACTACCGCGAGAGGATGCACAGCTTCCTCTTCCGCGAGGAAGAAGCCGAGCAGGCTCTGATTGCCAA
Seq C2 exon
ACTCAACCTGCGGGTCCTTATCTCACTGACCCACATGATGCAAAACCTCTCCATGGGGATGAAGTTCGCCCAGGCTGGCGAGCTGTTTGCTGAAGTGCCTACCCCTTATAACCTCTCACCGGACACAGACGAGGGATATCTACTGAACAGATCTGTGCCCACAGCTTTCCTGGCACTTGACCCCCCTGTAGACAATCGAGTTTATGAGGTTAGTGTGGAGAATAAAGCCACCACGGAGAAGACAATCTGGCTACAGATACCAAAGAGATGTTGCTCAGAGCTGAACTTGAAGCCAAAAACCTCCCACAATGTGGAGATCCAGTTCCAAATCGACCAGCTGCTGTTCCGGCAGTGGCACCAGGCTGTTGACCGCCTGTTGGATGAGAGACTGGTCCTACCTGATGTTGCCAGTTGTTCTATCCCCTTCTGCCTCCAAGAGCCACAGATAGGGAACAGCAAACAGAAGTTGGCCATCTCCTTCATCGCTGGCCAGGCAACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006138_CASSETTE2
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.023 C2=0.009
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF130861=AAA_11=PU(31.9=28.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGAAGTACCGGTGGAAGT
R:
TGTGGGAGGTTTTTGGCTTCA
Band lengths:
346-870
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]