MmuEX6107655 @ mm9
Exon Skipping
Gene
ENSMUSG00000027580 | BC006779
Description
cDNA sequence BC006779 [Source:MGI Symbol;Acc:MGI:2385169]
Coordinates
chr2:180972061-180974116:-
Coord C1 exon
chr2:180974012-180974116
Coord A exon
chr2:180972801-180973318
Coord C2 exon
chr2:180972061-180972702
Length
518 bp
Sequences
Splice sites
3' ss Seq
GCCTATGTCTCCTTCTCCAGGAT
3' ss Score
11.06
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
ATGGCTGAGACCATCCGTGGAGTGTCTGTCACTTGCCACCCACCACCGGTGCATCAGGCCCAGGAGAAGATCCAGCACCAGTGGGTGTTCACCATCCACTCTGAG
Seq A exon
GATCCCTTGCTACATGTGGCCCTACTCAATCAAGAGCCTGGAGCAGCTTTCTCACTGGTGGCCCCCAGTCTCCCACCACACCAGCTCTATGCACAGGGAAAGCACTTCTGTGTACAAAGCTCCCCAGCCCAATACAAGGTAGGGGTGCTTGTGCAGGCTGTCGCCTTCGGCAGCTTTGAGCAGTGGGTGGTCTTTGACTTTGGTCGCAGGCCAGTGCTTCTCCAGAAGCTGAAGTTGCAGCTAGGCCAGACACACAGCCAGGGCCTAAATGGGAAGCCAGCACCCAGCCACCCCCAGGAGCTGGAATGCTGGCACACAGGCAACCGCCACGTGGTGCTTGAGGTAGATTGGACACCCGAGCAGGAAGCCCTGATGGCCAAGTACAAGTTACCCTCCCTGGCCCTGGAGTTCAATCAGATTGTTCCGGACTGGGGGCCCATCTCTCGTTCGAACTACCGACAGAGGATGCACAAATTTCTCTATGAGGAGGAAGCAGCCCAGCAGCAGCTAGTAGCCAA
Seq C2 exon
GCTGGCCATGAAGGGCCAGGTATCCCTGAAGACAGCACTGGAGACACCAGCACTCGGCATGCTCTTCGCACCACCAGGGGCCCTCTATGCCAAGGTCCCCTTCCACTCCTCTCTGTTGCCAGACACTGATCAGGGCTTCCTGTTGAGCCGAGCAGTCAGCACAGCCCTTGTGGCTCCCGTGCCTGCGCCTAACAGTACAGTATACCAAGTGCGGCTGGAGGCACGGGCCAGTTCAGACCATGCGCTGTGGCTGCTGTTACCAGCACGATGCTGTATGGCTTTGGGGCTGCAGGCCCAAGACAGCCCCATCTTGGAGGTGCAGTTCCAGATTGACCCTATGACCTTCCGGTTCTGGCATCAGGCAGTGGATGCACTGCTCGAGGAGCACCTGGTGGTTCCTGACCTGCCTGCCTGCACCCTGCCCCACCCCTGGCCCACCCCACCCTCATTTCGTGGCAATCACAAACAGAAGCTGGCTGTGGGGCTCATTGCAGGCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027580-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.104 C2=0.023
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF130861=AAA_11=PU(53.0=28.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGTTCACCATCCACTCTG
R:
TCTGGAACTGCACCTCCAAGA
Band lengths:
352-870
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: