DreEX0006790 @ danRer10
Exon Skipping
Gene
ENSDARG00000099803 | PIK3C2G
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma [Source:HGNC Symbol;Acc:HGNC:8973]
Coordinates
chr18:50915520-50917247:-
Coord C1 exon
chr18:50917125-50917247
Coord A exon
chr18:50916288-50916416
Coord C2 exon
chr18:50915520-50915634
Length
129 bp
Sequences
Splice sites
3' ss Seq
TGATGTTCTGTGTGTGTCAGGCT
3' ss Score
7.29
5' ss Seq
CAGGTACGC
5' ss Score
10.12
Exon sequences
Seq C1 exon
GTATGATCACCTCCGCATGAGTGTGTCTGTCACACACAGCGGCAGGAATCTGGCTGAACCGGTGCAGTGTGAGAACATCAGCACGTCTCTGCAGCTCCACGGCAGGATTCACTGCAATCGCCA
Seq A exon
GCTGGTGTTTCCTCTGGCCGTCAGAGATCTGCCGTATGAGTCTGTGCTGTGCTTCTCTCTGCTGGGCTGTAAGCAGGGCCGCTGTGCTGATCCGCTGTGCTGGGCTGTTCTTCCTCTCTTCAGTGACAG
Seq C2 exon
GACTCTGGCTCACGGGACGCTCCTGCTGAGCATGAACACACAGGAGACGAACAGCTGCCCTGCATCTGCAGCCCTCAGCGACACACACCGACAGCCCAGCGGCGTCATACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099803_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.077
Domain overlap (PFAM):
C1:
PF0079219=PI3K_C2=PU(31.2=95.2)
A:
PF0079219=PI3K_C2=FE(33.6=100)
C2:
PF0079219=PI3K_C2=FE(29.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCACCTCCGCATGAGTGTG
R:
CTGCAGTATGACGCCGCTG
Band lengths:
234-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]