GgaEX6002844 @ galGal3
Exon Skipping
Gene
ENSGALG00000013117 | PIK3C2G
Description
NA
Coordinates
chr1:66188286-66205532:+
Coord C1 exon
chr1:66188286-66188481
Coord A exon
chr1:66199176-66199307
Coord C2 exon
chr1:66205418-66205532
Length
132 bp
Sequences
Splice sites
3' ss Seq
TTTCCTTTATTTTATTTTAGAAT
3' ss Score
10.6
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
CATTAACGGAAGCTGCTGTGACAGAGCTCTCCATGGCCATCTCTCATCTCATCCATGTGTACAGCAGCAGCTTTGATACAGATTTCCAGGTTGCCAACATACCTAGAAGCCCTTCTCGTGCAGACATCAGCCTTGATTCCCAGCTCAGCTTCACTGTCTATGCTGCTCATAACATTCCTGAAGCCTGGGTGAACAG
Seq A exon
AATCAACTTTCCTCTACGGATAAAGGCTCTTCCAAGGGAAACAATGCTGACAATAAAACTACTTGGACTAAACAGTGCTTCTAAAACTACAGAGATGCTTGCCTGGACATGTTGCCCATTGTATCAAAAAGA
Seq C2 exon
GCAGCTCATTCATGGAACTGTGCTGCTTAGCATGAAATTGTACAGCATGCTTCCAGCAGCAATGATTACCCCAGCCATGTGTAGTACTGATGCACCGACATCAGTAACATTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013117-'11-13,'11-12,13-13=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0079219=PI3K_C2=PU(26.0=37.9)
A:
PF0079219=PI3K_C2=FE(45.8=100)
C2:
PF0079219=PI3K_C2=PD(27.1=66.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGTGACAGAGCTCTCCAT
R:
GCTGGGGTAATCATTGCTGCT
Band lengths:
258-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]