GgaEX6002844 @ galGal4
Exon Skipping
Gene
ENSGALG00000013117 | PIK3C2G
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma [Source:HGNC Symbol;Acc:HGNC:8973]
Coordinates
chr1:64184945-64198640:+
Coord C1 exon
chr1:64184945-64185067
Coord A exon
chr1:64192284-64192415
Coord C2 exon
chr1:64198526-64198640
Length
132 bp
Sequences
Splice sites
3' ss Seq
TTTCCTTTATTTTATTTTAGAAT
3' ss Score
10.6
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
ATACAAACTTTTTTCTTTTTCCTGTTTGCTAACCTATGCTGGGAAGACAATATGTCAAGTGAAGATTTGCAAAAATATACCTGTTAGAAAATCCTTCTTTTTCTTGACAGACTGGAATGAGAA
Seq A exon
AATCAACTTTCCTCTACGGATAAAGGCTCTTCCAAGGGAAACAATGCTGACAATAAAACTACTTGGACTAAACAGTGCTTCTAAAACTACAGAGATGCTTGCCTGGACATGTTGCCCATTGTATCAAAAAGA
Seq C2 exon
GCAGCTCATTCATGGAACTGTGCTGCTTAGCATGAAATTGTACAGCATGCTTCCAGCAGCAATGATTACCCCAGCCATGTGTAGTACTGATGCACCGACATCAGTAACATTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013117-'14-16,'14-14,15-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0079219=PI3K_C2=PU(36.9=97.6)
A:
PF0079219=PI3K_C2=FE(39.3=100)
C2:
PF0079219=PI3K_C2=PD(22.3=64.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTCTTTTTCCTGTTTGCTAACCT
R:
GCAATGTTACTGATGTCGGTGC
Band lengths:
226-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]