RnoEX6015471 @ rn6
Exon Skipping
Gene
ENSRNOG00000034228 | Pik3c2g
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma [Source:RGD Symbol;Acc:620231]
Coordinates
chr4:173843216-173855921:+
Coord C1 exon
chr4:173843216-173843338
Coord A exon
chr4:173849622-173849753
Coord C2 exon
chr4:173855807-173855921
Length
132 bp
Sequences
Splice sites
3' ss Seq
ATCCTTTCTTTGCTTTTCAGAAT
3' ss Score
10.28
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
CTACAAAGCATTTTCATTTTCCTGCTGGCTCACATATGCTGGGAAGAAGCTGTGCCAAGTGAAAAGCTGCAGATCCCTGCCAGTCACAAAGTCATTCTCTTTTTCGGTGAACTGGAATGAAAT
Seq A exon
AATCAATTTTCCTCTTGAGATAAAGTCACTTCCAAGAGAATCCATGCTCGTTATAAAGCTGTTTGGGATTGACAGTGCCACCCACAGCGCAAATCTGCTGGCCTGGACCTGCCTTCCACTATTTCCAAAAGA
Seq C2 exon
AAAGTCTCCGCTGGGGTCTAGGCTTCTCAGCATGACACTACAGAGTGAGCCTCCTATAGAAATGATGGCTCCAGGAGTATGGGATGGGAGCCAGCCTACCCCACTGACCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034228-'17-18,'17-17,18-18=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.051
Domain overlap (PFAM):
C1:
PF0079219=PI3K_C2=PU(31.5=97.6)
A:
PF0079219=PI3K_C2=FE(33.8=100)
C2:
PF0079219=PI3K_C2=FE(29.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGCATTTTCATTTTCCTGCTGG
R:
CTGCAGGGTCAGTGGGGTAG
Band lengths:
235-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]