MmuEX6007662 @ mm10
Exon Skipping
Gene
ENSMUSG00000030228 | Pik3c2g
Description
phosphatidylinositol 3-kinase, C2 domain containing, gamma polypeptide [Source:MGI Symbol;Acc:MGI:1203730]
Coordinates
chr6:139730362-139743420:+
Coord C1 exon
chr6:139730362-139730484
Coord A exon
chr6:139736894-139737025
Coord C2 exon
chr6:139743306-139743420
Length
132 bp
Sequences
Splice sites
3' ss Seq
ATACTTTCTTTGCTTTTCAGAAT
3' ss Score
9.96
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
CTACAAAGCATTTTCGTTTTCCTGCTGGCTCACATATGCTGGGAAGAAGCTGTGCCAAGTGAAAAGCTGCAGACCCCTGCCAGTCACAAAGTCATTCTCCCTTTTGGTCAACTGGAATGAAAT
Seq A exon
AATCAATTTTCCTCTTGAGATAAAGTCACTTCCAAGAGAATCCATGCTCATTATAAAACTGTTCGGGATTGACTCTGCCACCCACAGCACAAATCTGCTGGCCTGGACCTGCCTTCCACTGTTTCCAAGACA
Seq C2 exon
GGAGTCTGTGCTGGGGTCTAGGCTGTTCAGTGTGACGTTACAGAGTGAGCCTCCTATCGAAATGATAGCTCCAGGCGTATGGGATGGGAGCCAGCCTTCCCCACTGACCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030228-'13-35,'13-24,24-35=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.026
Domain overlap (PFAM):
C1:
PF0079219=PI3K_C2=PU(31.5=97.6)
A:
PF0079219=PI3K_C2=FE(33.8=100)
C2:
PF0079219=PI3K_C2=FE(29.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCATTTTCGTTTTCCTGCTGG
R:
CTGCAGGGTCAGTGGGGAAG
Band lengths:
234-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types